LINC02872

Summary

LINC02872 (long intergenic non-protein coding RNA 2872, HGNC:33817) is a long non-coding RNA gene on chromosome 9q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:33817
Approved symbol	LINC02872
Name	long intergenic non-protein coding RNA 2872
Location	9q21.33
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ45537
Ensembl gene	ENSG00000204446
Ensembl biotype	lncRNA
Entrez	401535
RNAcentral	URS0000E60A5B — lncRNA, 3409 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000623052, ENST00000836294, ENST00000836295

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000623052 — 2 exons

Exon	Start	End
ENSE00004255569	87156573	87159556
ENSE00004255571	87148404	87148898

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 77.92.

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.92	silver quality
skeletal muscle tissue	UBERON:0001134	60.34	silver quality
calcaneal tendon	UBERON:0003701	59.37	gold quality
ganglionic eminence	UBERON:0004023	55.69	silver quality
hindlimb stylopod muscle	UBERON:0004252	54.63	silver quality
corpus callosum	UBERON:0002336	53.96	gold quality
prefrontal cortex	UBERON:0000451	52.49	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	52.05	gold quality
substantia nigra	UBERON:0002038	51.66	gold quality
primary visual cortex	UBERON:0002436	50.91	gold quality
myometrium	UBERON:0001296	50.70	gold quality
muscle of leg	UBERON:0001383	50.31	gold quality
Ammon’s horn	UBERON:0001954	49.95	gold quality
gastrocnemius	UBERON:0001388	49.64	gold quality
liver	UBERON:0002107	49.51	silver quality
amygdala	UBERON:0001876	49.46	gold quality
lymph node	UBERON:0000029	48.84	silver quality
putamen	UBERON:0001874	48.31	gold quality
body of uterus	UBERON:0009853	48.31	gold quality
placenta	UBERON:0001987	47.79	silver quality
cortex of kidney	UBERON:0001225	47.66	gold quality
frontal cortex	UBERON:0001870	47.43	gold quality
endometrium	UBERON:0001295	47.28	gold quality
right ovary	UBERON:0002118	46.46	gold quality
brain	UBERON:0000955	46.36	gold quality
hypothalamus	UBERON:0001898	46.32	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.31	gold quality
cerebral cortex	UBERON:0000956	46.27	gold quality
gall bladder	UBERON:0002110	46.09	silver quality
superior frontal gyrus	UBERON:0002661	46.06	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.