LINC02874

Summary

LINC02874 (long intergenic non-protein coding RNA 2874, HGNC:27473) is a long non-coding RNA gene on chromosome 12q13.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27473
Approved symbol	LINC02874
Name	long intergenic non-protein coding RNA 2874
Location	12q13.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257137
Ensembl biotype	lncRNA
Entrez	283403
RNAcentral	URS0000EEACD4 — lncRNA, 1616 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000551332, ENST00000551894, ENST00000553017, ENST00000639627, ENST00000656354, ENST00000665543, ENST00000806904, ENST00000806905, ENST00000806906, ENST00000806907, ENST00000806908, ENST00000806909, ENST00000806910, ENST00000806911, ENST00000806912, ENST00000806913, ENST00000806914

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000551332 — 3 exons

Exon	Start	End
ENSE00002339120	52205785	52206179
ENSE00002385975	52208105	52208402
ENSE00002389627	52206514	52206643

Expression profiles

Bgee: expression breadth broad, 65 present calls, max score 87.60.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0100 / max 8.5706, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
131007	0.0100	3

Top tissues by expression

180 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	87.60	gold quality
anterior cingulate cortex	UBERON:0009835	86.59	gold quality
cerebellar vermis	UBERON:0004720	71.96	gold quality
left testis	UBERON:0004533	71.37	gold quality
right testis	UBERON:0004534	70.82	gold quality
testis	UBERON:0000473	69.51	gold quality
sural nerve	UBERON:0015488	67.90	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	67.51	gold quality
epithelium of nasopharynx	UBERON:0001951	67.10	gold quality
parotid gland	UBERON:0001831	66.00	gold quality
adult mammalian kidney	UBERON:0000082	65.44	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.87	gold quality
cardiac atrium	UBERON:0002081	64.57	gold quality
cardia of stomach	UBERON:0001162	63.49	gold quality
saphenous vein	UBERON:0007318	63.23	gold quality
ventral tegmental area	UBERON:0002691	63.20	gold quality
pericardium	UBERON:0002407	62.93	gold quality
subthalamic nucleus	UBERON:0001906	62.44	gold quality
corpus callosum	UBERON:0002336	62.39	gold quality
cerebellar hemisphere	UBERON:0002245	62.37	gold quality
stromal cell of endometrium	CL:0002255	62.23	gold quality
inferior vagus X ganglion	UBERON:0005363	62.20	gold quality
skeletal muscle tissue	UBERON:0001134	62.16	gold quality
dorsal plus ventral thalamus	UBERON:0001897	62.09	gold quality
pylorus	UBERON:0001166	62.07	gold quality
nipple	UBERON:0002030	62.06	gold quality
lymph node	UBERON:0000029	62.03	gold quality
uterine cervix	UBERON:0000002	62.01	gold quality
fundus of stomach	UBERON:0001160	62.00	gold quality
medulla oblongata	UBERON:0001896	61.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.