LINC02880

Summary

LINC02880 (long intergenic non-protein coding RNA 2880, HGNC:54660) is a long non-coding RNA gene on chromosome 6q21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54660
Approved symbol	LINC02880
Name	long intergenic non-protein coding RNA 2880
Location	6q21
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ34503
Ensembl gene	ENSG00000175967
Ensembl biotype	lncRNA
Entrez	285759
RNAcentral	URS000075A3C8 — lncRNA, 2006 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000314481, ENST00000658538, ENST00000793169, ENST00000793170

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000314481 — 4 exons

Exon	Start	End
ENSE00001272597	113916943	113917052
ENSE00001272608	113919107	113919457
ENSE00004175779	113920456	113921642
ENSE00004175783	113904120	113904744

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 80.10.

Top tissues by expression

217 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.10	gold quality
apex of heart	UBERON:0002098	66.01	gold quality
ventricular zone	UBERON:0003053	62.60	gold quality
heart left ventricle	UBERON:0002084	60.85	gold quality
cardiac ventricle	UBERON:0002082	60.25	gold quality
ganglionic eminence	UBERON:0004023	58.90	gold quality
ectocervix	UBERON:0012249	56.74	gold quality
heart	UBERON:0000948	55.22	gold quality
lymph node	UBERON:0000029	53.97	gold quality
upper lobe of left lung	UBERON:0008952	53.88	gold quality
right ovary	UBERON:0002118	53.78	gold quality
stromal cell of endometrium	CL:0002255	53.10	silver quality
smooth muscle tissue	UBERON:0001135	52.67	gold quality
right lobe of liver	UBERON:0001114	52.63	gold quality
monocyte	CL:0000576	52.60	silver quality
upper lobe of lung	UBERON:0008948	52.47	gold quality
right uterine tube	UBERON:0001302	52.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.24	silver quality
left ovary	UBERON:0002119	52.14	gold quality
calcaneal tendon	UBERON:0003701	52.00	silver quality
muscle of leg	UBERON:0001383	51.81	gold quality
uterine cervix	UBERON:0000002	51.59	gold quality
endocervix	UBERON:0000458	51.56	gold quality
visceral pleura	UBERON:0002401	51.50	silver quality
right lung	UBERON:0002167	51.05	gold quality
lung	UBERON:0002048	51.01	gold quality
gastrocnemius	UBERON:0001388	50.90	gold quality
ovary	UBERON:0000992	50.64	gold quality
body of uterus	UBERON:0009853	50.57	gold quality
adrenal tissue	UBERON:0018303	49.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.