LINC02882

Summary

LINC02882 (long intergenic non-protein coding RNA 2882, HGNC:54802) is a long non-coding RNA gene on chromosome 12q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54802
Approved symbol	LINC02882
Name	long intergenic non-protein coding RNA 2882
Location	12q21.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-81H3.2
Ensembl gene	ENSG00000251138
Ensembl biotype	lncRNA
Entrez	100507377
RNAcentral	URS000075BF55 — lncRNA, 750 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 42 — 42 lncRNA

ENST00000515416, ENST00000548427, ENST00000549905, ENST00000551210, ENST00000551726, ENST00000653134, ENST00000656876, ENST00000658677, ENST00000658833, ENST00000662107, ENST00000663261, ENST00000665895, ENST00000665907, ENST00000668228, ENST00000668665, ENST00000668997, ENST00000669556, ENST00000670471, ENST00000670573, ENST00000716241, ENST00000716242, ENST00000716243, ENST00000716244, ENST00000716245, ENST00000716246, ENST00000716247, ENST00000716248, ENST00000716249, ENST00000716250, ENST00000716251, ENST00000716252, ENST00000716253, ENST00000756771, ENST00000756772, ENST00000756773, ENST00000756774, ENST00000756775, ENST00000756776, ENST00000756777, ENST00000756778, ENST00000756779, ENST00000756780

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515416 — 4 exons

Exon	Start	End
ENSE00002022140	74285025	74285093
ENSE00002047852	74285860	74285946
ENSE00002064030	74199572	74200073
ENSE00004107121	74292315	74292941

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 82.35.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.2986 / max 108.3331, expressed in 149 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
132135	1.1172	88
132137	0.1814	61

Top tissues by expression

214 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.35	gold quality
pancreatic ductal cell	CL:0002079	77.42	silver quality
corpus callosum	UBERON:0002336	74.67	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.65	gold quality
upper arm skin	UBERON:0004263	73.39	gold quality
kidney epithelium	UBERON:0004819	73.08	gold quality
epithelial cell of pancreas	CL:0000083	70.53	gold quality
buccal mucosa cell	CL:0002336	70.40	gold quality
parotid gland	UBERON:0001831	67.01	gold quality
nasal cavity epithelium	UBERON:0005384	66.82	gold quality
substantia nigra	UBERON:0002038	66.64	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	66.36	gold quality
midbrain	UBERON:0001891	65.77	gold quality
spinal cord	UBERON:0002240	65.65	gold quality
medial globus pallidus	UBERON:0002477	65.53	silver quality
vena cava	UBERON:0004087	65.24	gold quality
cortical plate	UBERON:0005343	64.46	gold quality
globus pallidus	UBERON:0001875	64.23	silver quality
cardiac muscle of right atrium	UBERON:0003379	64.03	gold quality
ganglionic eminence	UBERON:0004023	63.88	gold quality
ventricular zone	UBERON:0003053	63.47	gold quality
left ventricle myocardium	UBERON:0006566	63.00	gold quality
putamen	UBERON:0001874	62.78	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.63	gold quality
Ammon’s horn	UBERON:0001954	62.36	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	61.64	gold quality
myocardium	UBERON:0002349	61.59	gold quality
amygdala	UBERON:0001876	61.58	gold quality
sperm	CL:0000019	61.07	gold quality
sural nerve	UBERON:0015488	60.92	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.40

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.