LINC02884

Summary

LINC02884 (long intergenic non-protein coding RNA 2884, HGNC:54808) is a long non-coding RNA gene on chromosome 1p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54808
Approved symbol	LINC02884
Name	long intergenic non-protein coding RNA 2884
Location	1p13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231246
Ensembl biotype	lncRNA
Entrez	105378909
RNAcentral	URS00026A269B — lncRNA, 5602 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 51 — 51 lncRNA

ENST00000427290, ENST00000654472, ENST00000658120, ENST00000659549, ENST00000663553, ENST00000687286, ENST00000690113, ENST00000690217, ENST00000748382, ENST00000748384, ENST00000748385, ENST00000748386, ENST00000748387, ENST00000748388, ENST00000748389, ENST00000748390, ENST00000748391, ENST00000748392, ENST00000748393, ENST00000748394, ENST00000748395, ENST00000748396, ENST00000748397, ENST00000748398, ENST00000748399, ENST00000748400, ENST00000748401, ENST00000748402, ENST00000748403, ENST00000748404, ENST00000748405, ENST00000748406, ENST00000748407, ENST00000748408, ENST00000748409, ENST00000748410, ENST00000748411, ENST00000748412, ENST00000748413, ENST00000748414, ENST00000748415, ENST00000748416, ENST00000748417, ENST00000748418, ENST00000748419, ENST00000748420, ENST00000748421, ENST00000748422, ENST00000748423, ENST00000748424, ENST00000748425

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427290 — 2 exons

Exon	Start	End
ENSE00001597844	112360362	112360615
ENSE00001802820	112176836	112177613

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 82.12.

FANTOM5 (CAGE): breadth broad, TPM avg 0.6269 / max 39.7105, expressed in 227 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
13855	0.6269	227

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
calcaneal tendon	UBERON:0003701	82.12	gold quality
subcutaneous adipose tissue	UBERON:0002190	80.17	gold quality
adipose tissue	UBERON:0001013	80.13	gold quality
omental fat pad	UBERON:0010414	79.98	gold quality
thoracic mammary gland	UBERON:0005200	75.98	gold quality
mucosa of stomach	UBERON:0001199	74.89	gold quality
sural nerve	UBERON:0015488	74.54	gold quality
stromal cell of endometrium	CL:0002255	73.81	gold quality
tibial nerve	UBERON:0001323	73.70	gold quality
colonic epithelium	UBERON:0000397	73.49	gold quality
left coronary artery	UBERON:0001626	72.91	gold quality
monocyte	CL:0000576	71.87	gold quality
tibial artery	UBERON:0007610	71.36	gold quality
popliteal artery	UBERON:0002250	71.33	gold quality
leukocyte	CL:0000738	70.91	gold quality
left uterine tube	UBERON:0001303	70.69	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	70.67	gold quality
thoracic aorta	UBERON:0001515	70.42	gold quality
ascending aorta	UBERON:0001496	70.31	gold quality
urinary bladder	UBERON:0001255	70.05	gold quality
descending thoracic aorta	UBERON:0002345	69.44	gold quality
rectum	UBERON:0001052	69.21	gold quality
lower esophagus muscularis layer	UBERON:0035833	68.95	gold quality
right atrium auricular region	UBERON:0006631	68.80	gold quality
lower esophagus	UBERON:0013473	68.80	gold quality
prostate gland	UBERON:0002367	68.75	gold quality
gall bladder	UBERON:0002110	68.65	gold quality
vagina	UBERON:0000996	68.47	gold quality
right coronary artery	UBERON:0001625	68.00	gold quality
fundus of stomach	UBERON:0001160	67.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.