LINC02888

Summary

LINC02888 (long intergenic non-protein coding RNA 2888, HGNC:53765) is a long non-coding RNA gene on chromosome 7p21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53765
Approved symbol	LINC02888
Name	long intergenic non-protein coding RNA 2888
Location	7p21.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	KCCAT333
Ensembl gene	ENSG00000236318
Ensembl biotype	lncRNA
Entrez	102659288
RNAcentral	URS000075AB01 — lncRNA, 1395 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000419463, ENST00000635900, ENST00000636703

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419463 — 4 exons

Exon	Start	End
ENSE00001618421	17450995	17451061
ENSE00001667128	17374867	17375055
ENSE00001770708	17448881	17448948
ENSE00001782762	17466152	17466664

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 98.52.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0741 / max 43.4597, expressed in 22 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
77360	0.0665	20
204364	0.0076	4

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	98.52	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.45	gold quality
endometrium	UBERON:0001295	83.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	71.34	gold quality
urinary bladder	UBERON:0001255	69.04	gold quality
endocervix	UBERON:0000458	66.78	gold quality
cortex of kidney	UBERON:0001225	64.11	gold quality
right uterine tube	UBERON:0001302	60.42	gold quality
fallopian tube	UBERON:0003889	59.27	gold quality
myometrium	UBERON:0001296	55.57	gold quality
left uterine tube	UBERON:0001303	55.08	gold quality
metanephros cortex	UBERON:0010533	55.05	gold quality
lymph node	UBERON:0000029	54.74	gold quality
blood	UBERON:0000178	53.74	gold quality
monocyte	CL:0000576	53.46	gold quality
kidney	UBERON:0002113	53.11	gold quality
fundus of stomach	UBERON:0001160	52.31	gold quality
lung	UBERON:0002048	52.20	gold quality
prefrontal cortex	UBERON:0000451	51.58	gold quality
upper lobe of left lung	UBERON:0008952	51.30	gold quality
islet of Langerhans	UBERON:0000006	51.23	gold quality
pancreas	UBERON:0001264	51.09	gold quality
body of pancreas	UBERON:0001150	50.76	gold quality
gall bladder	UBERON:0002110	50.75	gold quality
right lung	UBERON:0002167	49.80	gold quality
adult mammalian kidney	UBERON:0000082	49.62	gold quality
calcaneal tendon	UBERON:0003701	49.24	silver quality
small intestine	UBERON:0002108	49.06	gold quality
placenta	UBERON:0001987	48.90	gold quality
bone marrow	UBERON:0002371	48.43	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	10.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.