LINC02889

Summary

LINC02889 (long intergenic non-protein coding RNA 2889, HGNC:55071) is a long non-coding RNA gene on chromosome 7p21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55071
Approved symbol	LINC02889
Name	long intergenic non-protein coding RNA 2889
Location	7p21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236039
Ensembl biotype	lncRNA
Entrez	101927630
RNAcentral	URS000042777B — lncRNA, 442 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 25 — 25 lncRNA

ENST00000439046, ENST00000451792, ENST00000454003, ENST00000636929, ENST00000652982, ENST00000654345, ENST00000655831, ENST00000656566, ENST00000657616, ENST00000658415, ENST00000658953, ENST00000659688, ENST00000659904, ENST00000660262, ENST00000662264, ENST00000663308, ENST00000664658, ENST00000665552, ENST00000668924, ENST00000670938, ENST00000838486, ENST00000843692, ENST00000843693, ENST00000843694, ENST00000843695

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439046 — 5 exons

Exon	Start	End
ENSE00001617787	17457459	17457589
ENSE00001647301	17434477	17434500
ENSE00001647568	17434948	17435105
ENSE00001717053	17460482	17460672
ENSE00001774214	17456678	17456762

Expression profiles

Bgee: expression breadth ubiquitous, 157 present calls, max score 90.62.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3185 / max 48.4474, expressed in 112 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
82914	0.1352	53
82912	0.1324	50
82910	0.0284	2
82913	0.0225	7

Top tissues by expression

232 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	90.62	gold quality
gall bladder	UBERON:0002110	83.29	gold quality
lower lobe of lung	UBERON:0008949	81.35	gold quality
oviduct epithelium	UBERON:0004804	79.61	gold quality
visceral pleura	UBERON:0002401	77.94	gold quality
upper lobe of lung	UBERON:0008948	77.07	gold quality
upper lobe of left lung	UBERON:0008952	76.51	gold quality
urinary bladder	UBERON:0001255	76.23	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.91	gold quality
lung	UBERON:0002048	75.52	gold quality
fallopian tube	UBERON:0003889	73.78	gold quality
body of pancreas	UBERON:0001150	73.70	gold quality
buccal mucosa cell	CL:0002336	73.47	gold quality
pancreas	UBERON:0001264	73.30	gold quality
islet of Langerhans	UBERON:0000006	72.47	gold quality
sural nerve	UBERON:0015488	71.59	gold quality
colonic epithelium	UBERON:0000397	69.70	gold quality
mucosa of paranasal sinus	UBERON:0005030	69.11	gold quality
right lobe of liver	UBERON:0001114	68.28	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	67.62	gold quality
mucosa of sigmoid colon	UBERON:0004993	67.26	gold quality
right lung	UBERON:0002167	67.13	gold quality
bone marrow cell	CL:0002092	65.75	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.24	gold quality
secondary oocyte	CL:0000655	64.99	gold quality
rectum	UBERON:0001052	64.26	gold quality
skin of hip	UBERON:0001554	63.09	gold quality
colonic mucosa	UBERON:0000317	61.96	gold quality
cortical plate	UBERON:0005343	61.29	silver quality
liver	UBERON:0002107	61.25	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	11.06

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.