LINC02893

Summary

LINC02893 (long intergenic non-protein coding RNA 2893, HGNC:55359) is a long non-coding RNA gene on chromosome 9q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55359
Approved symbol	LINC02893
Name	long intergenic non-protein coding RNA 2893
Location	9q21.33
Locus type	RNA, long non-coding
Status	Approved
Aliases	AL513318.2
Ensembl gene	ENSG00000269994
Ensembl biotype	lncRNA
Entrez	440173
RNAcentral	URS000075A316 — lncRNA, 2018 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000602579, ENST00000647820, ENST00000669870, ENST00000670732, ENST00000846373, ENST00000846374

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000602579 — 2 exons

Exon	Start	End
ENSE00003228490	87041871	87042126
ENSE00003397493	87008455	87010210

Expression profiles

Bgee: expression breadth ubiquitous, 146 present calls, max score 84.99.

Top tissues by expression

213 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
kidney epithelium	UBERON:0004819	84.99	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.25	gold quality
upper arm skin	UBERON:0004263	77.26	gold quality
cardiac muscle of right atrium	UBERON:0003379	73.85	gold quality
left ventricle myocardium	UBERON:0006566	73.72	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	73.63	gold quality
gingival epithelium	UBERON:0001949	72.62	silver quality
placenta	UBERON:0001987	70.27	gold quality
myocardium	UBERON:0002349	69.61	gold quality
vena cava	UBERON:0004087	69.44	silver quality
nasal cavity epithelium	UBERON:0005384	67.89	gold quality
pericardium	UBERON:0002407	67.78	gold quality
vastus lateralis	UBERON:0001379	67.32	gold quality
superficial temporal artery	UBERON:0001614	67.20	gold quality
kidney	UBERON:0002113	67.19	gold quality
gingiva	UBERON:0001828	67.03	silver quality
quadriceps femoris	UBERON:0001377	66.95	gold quality
adult mammalian kidney	UBERON:0000082	66.68	gold quality
buccal mucosa cell	CL:0002336	66.62	gold quality
layer of synovial tissue	UBERON:0007616	66.60	gold quality
renal medulla	UBERON:0000362	66.35	gold quality
lower lobe of lung	UBERON:0008949	65.67	silver quality
epithelium of mammary gland	UBERON:0003244	65.17	gold quality
mammary duct	UBERON:0001765	65.06	gold quality
body of tongue	UBERON:0011876	64.52	gold quality
saphenous vein	UBERON:0007318	64.41	gold quality
subthalamic nucleus	UBERON:0001906	64.02	gold quality
nipple	UBERON:0002030	64.02	silver quality
tongue	UBERON:0001723	63.97	gold quality
thymus	UBERON:0002370	63.87	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.26

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• A novel long noncoding RNA, LOC440173, promotes the progression of esophageal squamous cell carcinoma by modulating the miR-30d-5p/HDAC9 axis and the epithelial-mesenchymal transition. (PMID:33079409)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.