LINC02900

Summary

LINC02900 (long intergenic non-protein coding RNA 2900, HGNC:27964) is a long non-coding RNA gene on chromosome 5q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27964
Approved symbol	LINC02900
Name	long intergenic non-protein coding RNA 2900
Location	5q31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249647
Ensembl biotype	lncRNA
Entrez	340073
RNAcentral	URS000075DF3B — lncRNA, 2175 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000505663, ENST00000555344, ENST00000782736, ENST00000782737

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000505663 — 4 exons

Exon	Start	End
ENSE00002032607	135248126	135248179
ENSE00002045533	135247613	135247812
ENSE00002066641	135239153	135239304
ENSE00002086508	135236234	135237989

Expression profiles

Bgee: expression breadth broad, 50 present calls, max score 67.55.

Top tissues by expression

50 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
uterine cervix	UBERON:0000002	67.55	gold quality
colonic epithelium	UBERON:0000397	66.95	silver quality
tonsil	UBERON:0002372	66.35	silver quality
skeletal muscle tissue	UBERON:0001134	66.22	silver quality
bone marrow cell	CL:0002092	62.77	silver quality
myometrium	UBERON:0001296	60.09	gold quality
ectocervix	UBERON:0012249	57.82	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.01	silver quality
monocyte	CL:0000576	54.28	gold quality
blood	UBERON:0000178	53.06	silver quality
subcutaneous adipose tissue	UBERON:0002190	51.43	gold quality
calcaneal tendon	UBERON:0003701	51.36	silver quality
urinary bladder	UBERON:0001255	50.13	silver quality
endometrium	UBERON:0001295	49.09	gold quality
islet of Langerhans	UBERON:0000006	48.84	gold quality
lung	UBERON:0002048	47.47	silver quality
tibial artery	UBERON:0007610	46.87	gold quality
popliteal artery	UBERON:0002250	46.63	gold quality
esophagus	UBERON:0001043	46.56	gold quality
ascending aorta	UBERON:0001496	46.55	gold quality
gastrocnemius	UBERON:0001388	46.20	silver quality
stomach	UBERON:0000945	46.14	gold quality
intestine	UBERON:0000160	46.12	silver quality
colon	UBERON:0001155	45.59	silver quality
esophagus mucosa	UBERON:0002469	45.17	silver quality
right testis	UBERON:0004534	44.28	gold quality
multicellular organism	UBERON:0000468	43.96	gold quality
nucleus accumbens	UBERON:0001882	43.61	gold quality
lower esophagus muscularis layer	UBERON:0035833	43.22	gold quality
thyroid gland	UBERON:0002046	42.77	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.