LINC02901

Summary

LINC02901 (long intergenic non-protein coding RNA 2901, HGNC:21179) is a long non-coding RNA gene on chromosome 6q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:21179
Approved symbol	LINC02901
Name	long intergenic non-protein coding RNA 2901
Location	6q25.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	yR211F11.1
Ensembl gene	ENSG00000203711
Ensembl biotype	lncRNA
Entrez	100130967
RNAcentral	URS0000E60AFD — lncRNA, 810 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 94 — 94 lncRNA

ENST00000367072, ENST00000367073, ENST00000486232, ENST00000608817, ENST00000643288, ENST00000650421, ENST00000653976, ENST00000654049, ENST00000655791, ENST00000658761, ENST00000659187, ENST00000663340, ENST00000663769, ENST00000663950, ENST00000666927, ENST00000686607, ENST00000692856, ENST00000693135, ENST00000700908, ENST00000795721, ENST00000795722, ENST00000795723, ENST00000795724, ENST00000795725, ENST00000795726, ENST00000795727, ENST00000795728, ENST00000795729, ENST00000795730, ENST00000795731, ENST00000795732, ENST00000795733, ENST00000795734, ENST00000795735, ENST00000795736, ENST00000795737, ENST00000795738, ENST00000795739, ENST00000795740, ENST00000795741, ENST00000795742, ENST00000795743, ENST00000795744, ENST00000795745, ENST00000795746, ENST00000795747, ENST00000795748, ENST00000795749, ENST00000795750, ENST00000795751, ENST00000795752, ENST00000795753, ENST00000795754, ENST00000795755, ENST00000795756, ENST00000795757, ENST00000795758, ENST00000795759, ENST00000795760, ENST00000795761, ENST00000795762, ENST00000795763, ENST00000795764, ENST00000795765, ENST00000795766, ENST00000795767, ENST00000795768, ENST00000795769, ENST00000795770, ENST00000795771, ENST00000795772, ENST00000795773, ENST00000795774, ENST00000795775, ENST00000795776, ENST00000795777, ENST00000795778, ENST00000795779, ENST00000795780, ENST00000795781, ENST00000795782, ENST00000795783, ENST00000795784, ENST00000795785, ENST00000795786, ENST00000795787, ENST00000795788, ENST00000795789, ENST00000795790, ENST00000795791, ENST00000795792, ENST00000795793, ENST00000795794, ENST00000795795

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000367072 — 3 exons

Exon	Start	End
ENSE00001443416	158909967	158910353
ENSE00003815168	158895226	158895366
ENSE00004180759	158869814	158869977

Expression profiles

Bgee: expression breadth ubiquitous, 154 present calls, max score 96.88.

FANTOM5 (CAGE): breadth broad, TPM avg 2.1151 / max 122.1769, expressed in 584 samples.

FANTOM5 promoters (9 alternative TSS)

Promoter ID	TPM avg	Samples expressed
70899	0.7699	248
70897	0.4004	161
70898	0.3061	98
70894	0.2131	98
70901	0.1407	69
70896	0.1115	40
70900	0.0989	39
70902	0.0700	23
70895	0.0045	2

Top tissues by expression

247 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	96.88	gold quality
right testis	UBERON:0004534	96.75	gold quality
testis	UBERON:0000473	94.21	gold quality
sperm	CL:0000019	93.17	gold quality
adult organism	UBERON:0007023	90.01	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.66	gold quality
buccal mucosa cell	CL:0002336	79.31	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.05	gold quality
bone marrow cell	CL:0002092	69.67	gold quality
granulocyte	CL:0000094	69.60	gold quality
ganglionic eminence	UBERON:0004023	66.98	gold quality
ventricular zone	UBERON:0003053	66.80	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	66.39	gold quality
cortical plate	UBERON:0005343	65.01	gold quality
amniotic fluid	UBERON:0000173	64.28	silver quality
mucosa of paranasal sinus	UBERON:0005030	63.72	gold quality
oviduct epithelium	UBERON:0004804	63.67	silver quality
mucosa of transverse colon	UBERON:0004991	61.42	gold quality
islet of Langerhans	UBERON:0000006	60.59	gold quality
right uterine tube	UBERON:0001302	60.38	gold quality
body of stomach	UBERON:0001161	59.85	gold quality
pancreatic ductal cell	CL:0002079	59.63	silver quality
body of pancreas	UBERON:0001150	59.33	gold quality
pancreas	UBERON:0001264	59.33	gold quality
stomach	UBERON:0000945	58.12	gold quality
adult mammalian kidney	UBERON:0000082	57.43	gold quality
lower esophagus mucosa	UBERON:0035834	57.42	gold quality
right adrenal gland	UBERON:0001233	57.18	gold quality
left adrenal gland	UBERON:0001234	56.48	gold quality
lymph node	UBERON:0000029	56.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.