LINC02908

Summary

LINC02908 (long intergenic non-protein coding RNA 2908, HGNC:31426) is a long non-coding RNA gene on chromosome 9q34.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:31426
Approved symbol	LINC02908
Name	long intergenic non-protein coding RNA 2908
Location	9q34.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ36268, FLJ42909
Ensembl gene	ENSG00000180539
Ensembl biotype	lncRNA
Entrez	401563
RNAcentral	URS000212322C — lncRNA, 4988 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000457302, ENST00000623196, ENST00000671989, ENST00000672631

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000457302 — 2 exons

Exon	Start	End
ENSE00001612571	137037040	137037394
ENSE00001760541	137037614	137037955

Expression profiles

Bgee: expression breadth ubiquitous, 135 present calls, max score 98.42.

FANTOM5 (CAGE): breadth broad, TPM avg 0.4965 / max 39.0052, expressed in 187 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
99640	0.2107	78
99641	0.1426	71
99639	0.1316	56
99638	0.0116	3

Top tissues by expression

137 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar vermis	UBERON:0004720	98.42	silver quality
quadriceps femoris	UBERON:0001377	97.37	gold quality
thymus	UBERON:0002370	94.54	silver quality
blood	UBERON:0000178	81.57	gold quality
monocyte	CL:0000576	81.11	gold quality
leukocyte	CL:0000738	80.54	gold quality
right hemisphere of cerebellum	UBERON:0014890	79.36	gold quality
cerebellum	UBERON:0002037	79.09	gold quality
cerebellar cortex	UBERON:0002129	79.09	gold quality
cerebellar hemisphere	UBERON:0002245	79.07	gold quality
granulocyte	CL:0000094	78.30	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.77	gold quality
primary visual cortex	UBERON:0002436	76.63	gold quality
spleen	UBERON:0002106	75.13	gold quality
sural nerve	UBERON:0015488	74.48	gold quality
right frontal lobe	UBERON:0002810	74.08	gold quality
bone marrow cell	CL:0002092	73.86	gold quality
anterior cingulate cortex	UBERON:0009835	73.63	gold quality
Ammon’s horn	UBERON:0001954	73.21	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	73.19	gold quality
hypothalamus	UBERON:0001898	73.12	gold quality
superior frontal gyrus	UBERON:0002661	73.12	gold quality
cortical plate	UBERON:0005343	73.00	gold quality
putamen	UBERON:0001874	72.83	gold quality
brain	UBERON:0000955	72.78	gold quality
cerebral cortex	UBERON:0000956	72.47	gold quality
amygdala	UBERON:0001876	72.14	gold quality
temporal lobe	UBERON:0001871	72.09	gold quality
apex of heart	UBERON:0002098	72.06	gold quality
caudate nucleus	UBERON:0001873	72.01	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.68

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• [The role and mechanism of lncRNA C9ORF139 targeting miR-24-3P/TAOK1 in regulating the proliferation of acute myeloid leukemia cells]. (PMID:35196780)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.