LINC02909

Summary

LINC02909 (long intergenic non-protein coding RNA 2909, HGNC:27282) is a long non-coding RNA gene on chromosome 12p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27282
Approved symbol	LINC02909
Name	long intergenic non-protein coding RNA 2909
Location	12p12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226397
Ensembl biotype	lncRNA
Entrez	196415
RNAcentral	URS00021231BA — lncRNA, 1542 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000434912, ENST00000549262, ENST00000623395

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434912 — 3 exons

Exon	Start	End
ENSE00002406801	24996786	24996919
ENSE00002409400	24995670	24996067
ENSE00003563517	24996197	24996339

Expression profiles

Bgee: expression breadth ubiquitous, 141 present calls, max score 87.99.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0673 / max 40.2507, expressed in 16 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
130171	0.0347	11
130172	0.0325	11

Top tissues by expression

231 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
secondary oocyte	CL:0000655	87.99	gold quality
oocyte	CL:0000023	85.42	gold quality
bone marrow cell	CL:0002092	82.02	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.11	gold quality
buccal mucosa cell	CL:0002336	71.09	silver quality
apex of heart	UBERON:0002098	62.41	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	61.73	silver quality
lymph node	UBERON:0000029	60.67	gold quality
stromal cell of endometrium	CL:0002255	60.51	gold quality
monocyte	CL:0000576	58.86	gold quality
ganglionic eminence	UBERON:0004023	57.86	silver quality
hindlimb stylopod muscle	UBERON:0004252	56.22	gold quality
right adrenal gland cortex	UBERON:0035827	55.21	gold quality
islet of Langerhans	UBERON:0000006	54.59	gold quality
vermiform appendix	UBERON:0001154	54.47	gold quality
tonsil	UBERON:0002372	53.97	gold quality
lower esophagus mucosa	UBERON:0035834	53.02	gold quality
granulocyte	CL:0000094	52.75	gold quality
right lobe of liver	UBERON:0001114	52.04	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.47	gold quality
caecum	UBERON:0001153	50.80	gold quality
heart left ventricle	UBERON:0002084	50.45	gold quality
cardiac ventricle	UBERON:0002082	50.05	gold quality
skin of abdomen	UBERON:0001416	49.83	gold quality
pancreas	UBERON:0001264	49.59	gold quality
muscle of leg	UBERON:0001383	49.56	gold quality
body of pancreas	UBERON:0001150	49.40	gold quality
skin of leg	UBERON:0001511	49.34	gold quality
right adrenal gland	UBERON:0001233	49.31	gold quality
rectum	UBERON:0001052	49.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.57

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.