LINC02917

Summary

LINC02917 (long intergenic non-protein coding RNA 2917, HGNC:55643) is a long non-coding RNA gene on chromosome 3q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55643
Approved symbol	LINC02917
Name	long intergenic non-protein coding RNA 2917
Location	3q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000239941
Ensembl biotype	lncRNA
Entrez	121832814
RNAcentral	URS00026A1BCF — lncRNA, 3313 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000482382, ENST00000684841, ENST00000689682, ENST00000781727, ENST00000781728, ENST00000781729, ENST00000781730, ENST00000781731, ENST00000781732, ENST00000781733, ENST00000781734, ENST00000781735, ENST00000781736, ENST00000781909, ENST00000781910, ENST00000781911, ENST00000781912

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000482382 — 2 exons

Exon	Start	End
ENSE00004154402	152151666	152152436
ENSE00004154410	152118152	152118667

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 85.89.

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.89	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.97	gold quality
muscle tissue	UBERON:0002385	72.51	gold quality
endocervix	UBERON:0000458	66.96	gold quality
smooth muscle tissue	UBERON:0001135	66.71	gold quality
uterine cervix	UBERON:0000002	65.72	gold quality
stromal cell of endometrium	CL:0002255	63.28	gold quality
ectocervix	UBERON:0012249	63.14	gold quality
right coronary artery	UBERON:0001625	63.06	gold quality
leukocyte	CL:0000738	62.12	gold quality
sural nerve	UBERON:0015488	61.99	gold quality
calcaneal tendon	UBERON:0003701	61.62	gold quality
monocyte	CL:0000576	61.60	gold quality
tibial artery	UBERON:0007610	61.49	gold quality
popliteal artery	UBERON:0002250	61.44	gold quality
endometrium	UBERON:0001295	60.97	gold quality
lymph node	UBERON:0000029	60.77	gold quality
gall bladder	UBERON:0002110	60.38	gold quality
blood	UBERON:0000178	59.86	gold quality
placenta	UBERON:0001987	59.32	gold quality
vermiform appendix	UBERON:0001154	59.14	gold quality
tonsil	UBERON:0002372	58.11	gold quality
bone marrow	UBERON:0002371	57.70	gold quality
urinary bladder	UBERON:0001255	57.41	gold quality
myometrium	UBERON:0001296	56.56	gold quality
body of uterus	UBERON:0009853	55.37	gold quality
liver	UBERON:0002107	54.72	gold quality
descending thoracic aorta	UBERON:0002345	54.34	gold quality
thoracic aorta	UBERON:0001515	54.29	gold quality
vagina	UBERON:0000996	54.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.