LINC02939

Summary

LINC02939 (long intergenic non-protein coding RNA 2939, HGNC:55954) is a long non-coding RNA gene on chromosome 22q13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55954
Approved symbol	LINC02939
Name	long intergenic non-protein coding RNA 2939
Location	22q13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235159
Ensembl biotype	lncRNA
Entrez	642648
RNAcentral	URS0000BC43C7 — lncRNA, 3604 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000412643, ENST00000686483, ENST00000794764, ENST00000794765, ENST00000794766, ENST00000794767, ENST00000794768, ENST00000794769, ENST00000794770, ENST00000794771, ENST00000794772, ENST00000794773, ENST00000794774

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412643 — 3 exons

Exon	Start	End
ENSE00001594937	46069660	46069891
ENSE00001711421	46067971	46068089
ENSE00001795336	46067356	46067871

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 86.85.

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.85	gold quality
calcaneal tendon	UBERON:0003701	78.53	gold quality
sural nerve	UBERON:0015488	74.39	gold quality
corpus callosum	UBERON:0002336	74.38	gold quality
right uterine tube	UBERON:0001302	69.63	gold quality
bone marrow cell	CL:0002092	68.18	silver quality
skeletal muscle tissue	UBERON:0001134	67.97	gold quality
bone marrow	UBERON:0002371	65.51	gold quality
ventricular zone	UBERON:0003053	64.55	gold quality
islet of Langerhans	UBERON:0000006	64.52	gold quality
colonic epithelium	UBERON:0000397	64.27	silver quality
tonsil	UBERON:0002372	64.12	gold quality
left ovary	UBERON:0002119	63.82	gold quality
ovary	UBERON:0000992	63.80	gold quality
right hemisphere of cerebellum	UBERON:0014890	62.84	gold quality
ganglionic eminence	UBERON:0004023	62.74	gold quality
pituitary gland	UBERON:0000007	62.39	gold quality
fallopian tube	UBERON:0003889	62.30	gold quality
cerebellar cortex	UBERON:0002129	62.28	gold quality
cerebellum	UBERON:0002037	62.26	gold quality
cerebellar hemisphere	UBERON:0002245	62.19	gold quality
right ovary	UBERON:0002118	62.10	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.81	gold quality
adenohypophysis	UBERON:0002196	61.78	gold quality
cortical plate	UBERON:0005343	61.71	gold quality
body of uterus	UBERON:0009853	61.03	gold quality
adrenal tissue	UBERON:0018303	60.85	gold quality
tibial nerve	UBERON:0001323	60.80	gold quality
uterine cervix	UBERON:0000002	60.73	gold quality
myometrium	UBERON:0001296	60.55	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.