LINC02940

Summary

LINC02940 (long intergenic non-protein coding RNA 2940, HGNC:55955) is a long non-coding RNA gene on chromosome 21q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55955
Approved symbol	LINC02940
Name	long intergenic non-protein coding RNA 2940
Location	21q22.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	CCMAlnc
Ensembl gene	ENSG00000235888
Ensembl biotype	lncRNA
Entrez	102724740
RNAcentral	URS0000E73868 — lncRNA, 5629 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000417335, ENST00000419664, ENST00000652155, ENST00000655642, ENST00000663162, ENST00000666868, ENST00000691476, ENST00000743376, ENST00000743377, ENST00000743378, ENST00000743379, ENST00000743380, ENST00000743381, ENST00000743382, ENST00000743383, ENST00000743384, ENST00000743385, ENST00000743386, ENST00000743387, ENST00000743388, ENST00000743389, ENST00000743390, ENST00000743391, ENST00000809871

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417335 — 4 exons

Exon	Start	End
ENSE00001602024	38990827	38991024
ENSE00003885400	38988569	38989426
ENSE00004081711	39005660	39006784
ENSE00004081723	39007617	39007687

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 78.51.

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
spleen	UBERON:0002106	78.51	gold quality
colonic epithelium	UBERON:0000397	74.19	gold quality
skin of abdomen	UBERON:0001416	73.74	gold quality
zone of skin	UBERON:0000014	72.78	gold quality
mucosa of transverse colon	UBERON:0004991	72.32	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	72.03	gold quality
skin of leg	UBERON:0001511	71.97	gold quality
hindlimb stylopod muscle	UBERON:0004252	71.36	gold quality
upper lobe of left lung	UBERON:0008952	70.64	gold quality
skeletal muscle tissue	UBERON:0001134	69.40	gold quality
lung	UBERON:0002048	69.35	gold quality
blood	UBERON:0000178	69.31	gold quality
mucosa of stomach	UBERON:0001199	69.31	gold quality
lymph node	UBERON:0000029	68.63	gold quality
gastrocnemius	UBERON:0001388	68.59	gold quality
muscle of leg	UBERON:0001383	68.11	gold quality
rectum	UBERON:0001052	67.96	gold quality
sural nerve	UBERON:0015488	67.38	silver quality
right lung	UBERON:0002167	67.29	gold quality
cortex of kidney	UBERON:0001225	66.85	gold quality
descending thoracic aorta	UBERON:0002345	66.65	gold quality
small intestine Peyer’s patch	UBERON:0003454	66.60	gold quality
small intestine	UBERON:0002108	66.53	gold quality
vermiform appendix	UBERON:0001154	66.50	gold quality
superior frontal gyrus	UBERON:0002661	66.40	gold quality
right frontal lobe	UBERON:0002810	66.10	gold quality
granulocyte	CL:0000094	65.72	gold quality
monocyte	CL:0000576	65.64	gold quality
leukocyte	CL:0000738	65.51	gold quality
endocervix	UBERON:0000458	65.04	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.50

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.