LINC02945

Summary

LINC02945 (long intergenic non-protein coding RNA 2945, HGNC:55960) is a long non-coding RNA gene on chromosome 4q25.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55960
Approved symbol	LINC02945
Name	long intergenic non-protein coding RNA 2945
Location	4q25
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC004704.1
Ensembl gene	ENSG00000249815
Ensembl biotype	lncRNA
Entrez	123464519
RNAcentral	URS00026A25D3 — lncRNA, 1265 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000508010, ENST00000511219, ENST00000679735, ENST00000681091, ENST00000797990, ENST00000797991, ENST00000797992, ENST00000797993, ENST00000797994, ENST00000797995, ENST00000797996, ENST00000797997

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508010 — 5 exons

Exon	Start	End
ENSE00004185162	111809571	111809726
ENSE00004185163	111828927	111829050
ENSE00004185164	112072565	112072656
ENSE00004185172	111803231	111804593
ENSE00004185175	112020414	112020515

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 77.76.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.76	silver quality
cortical plate	UBERON:0005343	64.86	gold quality
skeletal muscle tissue	UBERON:0001134	59.34	gold quality
gall bladder	UBERON:0002110	57.99	gold quality
placenta	UBERON:0001987	54.63	gold quality
lymph node	UBERON:0000029	54.55	gold quality
urinary bladder	UBERON:0001255	54.42	gold quality
prefrontal cortex	UBERON:0000451	53.57	gold quality
monocyte	CL:0000576	53.48	gold quality
islet of Langerhans	UBERON:0000006	53.27	gold quality
leukocyte	CL:0000738	52.44	gold quality
bone marrow	UBERON:0002371	52.38	silver quality
cortex of kidney	UBERON:0001225	52.00	silver quality
vermiform appendix	UBERON:0001154	51.72	gold quality
descending thoracic aorta	UBERON:0002345	51.51	gold quality
hindlimb stylopod muscle	UBERON:0004252	51.08	gold quality
smooth muscle tissue	UBERON:0001135	50.78	gold quality
calcaneal tendon	UBERON:0003701	50.71	silver quality
endometrium	UBERON:0001295	49.96	silver quality
blood	UBERON:0000178	49.78	silver quality
muscle of leg	UBERON:0001383	49.39	gold quality
gastrocnemius	UBERON:0001388	49.15	gold quality
liver	UBERON:0002107	47.43	silver quality
stomach	UBERON:0000945	47.09	gold quality
body of stomach	UBERON:0001161	47.06	gold quality
myometrium	UBERON:0001296	46.81	gold quality
tibial artery	UBERON:0007610	46.80	gold quality
right lobe of liver	UBERON:0001114	46.73	silver quality
cerebellar cortex	UBERON:0002129	45.93	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.