LINC02953

Summary

LINC02953 (long intergenic non-protein coding RNA 2953, HGNC:55970) is a long non-coding RNA gene on chromosome 11q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55970
Approved symbol	LINC02953
Name	long intergenic non-protein coding RNA 2953
Location	11q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255980
Ensembl biotype	lncRNA
Entrez	102724265
RNAcentral	URS0002278313 — lncRNA, 2414 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000545202

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000545202 — 2 exons

Exon	Start	End
ENSE00004183180	69425655	69425806
ENSE00004183181	69427363	69429621

Expression profiles

Bgee: expression breadth broad, 55 present calls, max score 80.60.

Top tissues by expression

55 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.60	gold quality
placenta	UBERON:0001987	63.26	gold quality
testis	UBERON:0000473	58.00	gold quality
prefrontal cortex	UBERON:0000451	57.97	gold quality
substantia nigra	UBERON:0002038	57.62	gold quality
lung	UBERON:0002048	55.91	gold quality
temporal lobe	UBERON:0001871	55.55	gold quality
amygdala	UBERON:0001876	55.36	gold quality
pancreas	UBERON:0001264	54.71	silver quality
blood	UBERON:0000178	54.58	gold quality
frontal cortex	UBERON:0001870	53.79	gold quality
Ammon’s horn	UBERON:0001954	53.39	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	52.95	gold quality
cerebral cortex	UBERON:0000956	52.44	gold quality
putamen	UBERON:0001874	52.35	gold quality
brain	UBERON:0000955	52.22	gold quality
Brodmann (1909) area 9	UBERON:0013540	52.02	gold quality
primary visual cortex	UBERON:0002436	51.77	gold quality
nucleus accumbens	UBERON:0001882	51.56	gold quality
multicellular organism	UBERON:0000468	51.43	gold quality
hypothalamus	UBERON:0001898	51.12	gold quality
liver	UBERON:0002107	50.87	gold quality
saliva-secreting gland	UBERON:0001044	50.84	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	50.67	gold quality
corpus callosum	UBERON:0002336	50.60	gold quality
anterior cingulate cortex	UBERON:0009835	50.43	gold quality
caudate nucleus	UBERON:0001873	50.23	gold quality
right lobe of liver	UBERON:0001114	50.10	gold quality
superior frontal gyrus	UBERON:0002661	49.31	gold quality
duodenum	UBERON:0002114	48.64	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.