LINC02965

Summary

LINC02965 (long intergenic non-protein coding RNA 2965, HGNC:56003) is a long non-coding RNA gene on chromosome 19q13.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56003
Approved symbol	LINC02965
Name	long intergenic non-protein coding RNA 2965
Location	19q13.11
Locus type	RNA, long non-coding
Status	Approved
Aliases	CTC-523E23.5, lnc-ZNF30-3
Ensembl gene	ENSG00000269086
Ensembl biotype	lncRNA
Entrez	123497957
RNAcentral	URS00026A1E53 — lncRNA, 822 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000600348, ENST00000601776, ENST00000656044, ENST00000656274, ENST00000659696, ENST00000661037, ENST00000665910, ENST00000666368, ENST00000668481, ENST00000668799, ENST00000668999, ENST00000669819, ENST00000670999, ENST00000730139

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000600348 — 6 exons

Exon	Start	End
ENSE00003007759	34838178	34838301
ENSE00003064070	34838662	34838788
ENSE00003073811	34838408	34838484
ENSE00003114159	34837889	34837995
ENSE00003194370	34841026	34841681
ENSE00003203928	34839599	34840221

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 87.43.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar vermis	UBERON:0004720	87.43	gold quality
quadriceps femoris	UBERON:0001377	82.83	gold quality
thymus	UBERON:0002370	81.08	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.57	silver quality
sural nerve	UBERON:0015488	72.85	gold quality
testis	UBERON:0000473	72.20	gold quality
left testis	UBERON:0004533	72.02	gold quality
right testis	UBERON:0004534	70.95	gold quality
granulocyte	CL:0000094	67.20	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.73	gold quality
blood	UBERON:0000178	63.57	gold quality
lymph node	UBERON:0000029	60.45	gold quality
skeletal muscle tissue	UBERON:0001134	58.62	gold quality
tonsil	UBERON:0002372	58.12	gold quality
placenta	UBERON:0001987	57.03	gold quality
leukocyte	CL:0000738	56.79	gold quality
spleen	UBERON:0002106	56.32	gold quality
right uterine tube	UBERON:0001302	56.15	gold quality
vermiform appendix	UBERON:0001154	55.82	gold quality
small intestine	UBERON:0002108	55.67	gold quality
muscle tissue	UBERON:0002385	55.65	gold quality
small intestine Peyer’s patch	UBERON:0003454	55.64	gold quality
cortical plate	UBERON:0005343	54.44	silver quality
bone marrow	UBERON:0002371	53.10	gold quality
monocyte	CL:0000576	51.88	silver quality
lower esophagus mucosa	UBERON:0035834	51.62	gold quality
myometrium	UBERON:0001296	51.34	gold quality
heart left ventricle	UBERON:0002084	51.13	gold quality
rectum	UBERON:0001052	51.11	gold quality
cortex of kidney	UBERON:0001225	50.85	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.02

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.