LINC02977

Summary

LINC02977 (long intergenic non-protein coding RNA 2977, HGNC:56036) is a long non-coding RNA gene on chromosome 9q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56036
Approved symbol	LINC02977
Name	long intergenic non-protein coding RNA 2977
Location	9q31.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-4O1.2
Ensembl gene	ENSG00000259953
Ensembl biotype	lncRNA
Entrez	105376220
RNAcentral	URS00026A1A4B — lncRNA, 3598 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000563249, ENST00000563434, ENST00000568421, ENST00000658557, ENST00000765801, ENST00000765802

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563249 — 2 exons

Exon	Start	End
ENSE00002598954	112035861	112035994
ENSE00002615739	112036651	112037115

Expression profiles

Bgee: expression breadth ubiquitous, 189 present calls, max score 83.74.

Top tissues by expression

250 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
granulocyte	CL:0000094	83.74	gold quality
monocyte	CL:0000576	83.38	gold quality
leukocyte	CL:0000738	83.34	gold quality
cortical plate	UBERON:0005343	82.32	gold quality
Brodmann (1909) area 23	UBERON:0013554	78.58	gold quality
ileal mucosa	UBERON:0000331	77.12	gold quality
ganglionic eminence	UBERON:0004023	75.42	gold quality
ventricular zone	UBERON:0003053	75.14	gold quality
middle temporal gyrus	UBERON:0002771	75.13	silver quality
mucosa of sigmoid colon	UBERON:0004993	75.13	gold quality
palpebral conjunctiva	UBERON:0001812	74.63	gold quality
endothelial cell	CL:0000115	74.18	silver quality
metanephros cortex	UBERON:0010533	73.98	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.96	gold quality
islet of Langerhans	UBERON:0000006	73.88	gold quality
colonic mucosa	UBERON:0000317	73.87	gold quality
mucosa of transverse colon	UBERON:0004991	73.39	gold quality
tibia	UBERON:0000979	72.57	gold quality
blood	UBERON:0000178	72.50	gold quality
primary visual cortex	UBERON:0002436	71.49	gold quality
prefrontal cortex	UBERON:0000451	71.37	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	71.23	gold quality
Brodmann (1909) area 9	UBERON:0013540	71.15	gold quality
stromal cell of endometrium	CL:0002255	71.14	gold quality
adult mammalian kidney	UBERON:0000082	71.08	gold quality
right adrenal gland cortex	UBERON:0035827	71.08	gold quality
anterior cingulate cortex	UBERON:0009835	70.87	gold quality
duodenum	UBERON:0002114	70.75	gold quality
placenta	UBERON:0001987	70.69	gold quality
colonic epithelium	UBERON:0000397	70.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.