LINC02980

Summary

LINC02980 (long intergenic non-protein coding RNA 2980, HGNC:56046) is a long non-coding RNA gene on chromosome 6p22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56046
Approved symbol	LINC02980
Name	long intergenic non-protein coding RNA 2980
Location	6p22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272462
Ensembl biotype	lncRNA
Entrez	123706533
RNAcentral	URS00022B1CE3 — lncRNA, 1382 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000606723, ENST00000653223, ENST00000656572, ENST00000656696, ENST00000658335, ENST00000658377, ENST00000658630, ENST00000660716, ENST00000666742, ENST00000670129, ENST00000730115, ENST00000730116, ENST00000730117, ENST00000730118, ENST00000730119, ENST00000730120, ENST00000730121, ENST00000730122, ENST00000730123, ENST00000730124

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000606723 — 2 exons

Exon	Start	End
ENSE00003695753	25992662	25992918
ENSE00003699254	25997903	26001775

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 78.64.

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
mucosa of stomach	UBERON:0001199	78.64	gold quality
apex of heart	UBERON:0002098	78.15	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.16	gold quality
colonic epithelium	UBERON:0000397	77.03	gold quality
heart left ventricle	UBERON:0002084	76.99	gold quality
right atrium auricular region	UBERON:0006631	76.68	gold quality
popliteal artery	UBERON:0002250	76.61	gold quality
tibial artery	UBERON:0007610	76.60	gold quality
heart	UBERON:0000948	76.26	gold quality
lower esophagus muscularis layer	UBERON:0035833	75.79	gold quality
lower esophagus	UBERON:0013473	75.75	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	75.34	gold quality
islet of Langerhans	UBERON:0000006	75.24	gold quality
superior frontal gyrus	UBERON:0002661	75.20	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	75.20	gold quality
right frontal lobe	UBERON:0002810	75.11	gold quality
muscle layer of sigmoid colon	UBERON:0035805	75.11	gold quality
descending thoracic aorta	UBERON:0002345	74.76	gold quality
thoracic aorta	UBERON:0001515	74.75	gold quality
ascending aorta	UBERON:0001496	74.67	gold quality
frontal cortex	UBERON:0001870	74.47	gold quality
hindlimb stylopod muscle	UBERON:0004252	74.41	gold quality
left coronary artery	UBERON:0001626	74.27	gold quality
anterior cingulate cortex	UBERON:0009835	74.11	gold quality
prefrontal cortex	UBERON:0000451	73.99	gold quality
muscle of leg	UBERON:0001383	73.98	gold quality
Brodmann (1909) area 9	UBERON:0013540	73.62	gold quality
primary visual cortex	UBERON:0002436	73.59	gold quality
smooth muscle tissue	UBERON:0001135	73.55	gold quality
cerebral cortex	UBERON:0000956	73.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.86

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.