LINC02988

Summary

LINC02988 (long intergenic non-protein coding RNA 2988, HGNC:56098) is a long non-coding RNA gene on chromosome 1q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56098
Approved symbol	LINC02988
Name	long intergenic non-protein coding RNA 2988
Location	1q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000285554
Ensembl biotype	lncRNA
Entrez	105371433
RNAcentral	URS0000A76ACE — lncRNA, 592 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000647691, ENST00000850138, ENST00000850139

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000647691 — 3 exons

Exon	Start	End
ENSE00003840479	150173730	150173814
ENSE00004281295	150173049	150173600
ENSE00004281297	150180912	150182935

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 80.46.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.46	gold quality
duodenum	UBERON:0002114	76.23	gold quality
monocyte	CL:0000576	72.71	gold quality
leukocyte	CL:0000738	72.26	gold quality
sural nerve	UBERON:0015488	68.31	silver quality
bone marrow cell	CL:0002092	67.82	silver quality
cortical plate	UBERON:0005343	66.45	gold quality
granulocyte	CL:0000094	62.19	gold quality
ganglionic eminence	UBERON:0004023	62.10	gold quality
ventricular zone	UBERON:0003053	61.57	gold quality
bone marrow	UBERON:0002371	61.34	gold quality
blood	UBERON:0000178	61.32	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	59.70	gold quality
skeletal muscle tissue	UBERON:0001134	59.23	silver quality
vermiform appendix	UBERON:0001154	57.55	gold quality
primary visual cortex	UBERON:0002436	56.55	gold quality
small intestine	UBERON:0002108	56.22	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.10	gold quality
smooth muscle tissue	UBERON:0001135	54.62	gold quality
small intestine Peyer’s patch	UBERON:0003454	53.76	gold quality
prefrontal cortex	UBERON:0000451	53.55	gold quality
stromal cell of endometrium	CL:0002255	53.35	silver quality
tibial nerve	UBERON:0001323	53.33	gold quality
lymph node	UBERON:0000029	52.54	gold quality
cortex of kidney	UBERON:0001225	52.27	gold quality
amygdala	UBERON:0001876	51.22	gold quality
caudate nucleus	UBERON:0001873	51.07	gold quality
intestine	UBERON:0000160	50.92	gold quality
kidney	UBERON:0002113	50.45	gold quality
adult mammalian kidney	UBERON:0000082	50.44	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.57

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.