LINC02994

Summary

LINC02994 (long intergenic non-protein coding RNA 2994, HGNC:56109) is a long non-coding RNA gene on chromosome 4q21.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56109
Approved symbol	LINC02994
Name	long intergenic non-protein coding RNA 2994
Location	4q21.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250546
Ensembl biotype	lncRNA
Entrez	101928978
RNAcentral	URS00007E3E2F — lncRNA, 2838 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000508406, ENST00000510016, ENST00000513489, ENST00000657959, ENST00000668493, ENST00000810499, ENST00000810500, ENST00000810501, ENST00000810502, ENST00000810503, ENST00000810504, ENST00000810505, ENST00000827819, ENST00000827820

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508406 — 8 exons

Exon	Start	End
ENSE00002024565	84293220	84293412
ENSE00002025474	84149219	84149256
ENSE00002028605	84148047	84148130
ENSE00002031915	84243111	84243216
ENSE00002078965	84012055	84012119
ENSE00002085003	83968082	83970110
ENSE00002087776	84284206	84284326
ENSE00002430310	84286669	84286827

Expression profiles

Bgee: expression breadth broad, 68 present calls, max score 80.95.

Top tissues by expression

177 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.95	gold quality
colonic epithelium	UBERON:0000397	74.67	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.26	gold quality
buccal mucosa cell	CL:0002336	65.85	gold quality
ectocervix	UBERON:0012249	62.90	gold quality
ganglionic eminence	UBERON:0004023	58.89	silver quality
islet of Langerhans	UBERON:0000006	57.56	gold quality
lower esophagus mucosa	UBERON:0035834	56.43	gold quality
upper leg skin	UBERON:0004262	55.41	silver quality
mucosa of transverse colon	UBERON:0004991	55.18	gold quality
lower lobe of lung	UBERON:0008949	55.14	silver quality
pancreas	UBERON:0001264	54.17	gold quality
transverse colon	UBERON:0001157	51.55	gold quality
left adrenal gland cortex	UBERON:0035825	50.50	gold quality
monocyte	CL:0000576	50.39	silver quality
muscle of leg	UBERON:0001383	48.44	gold quality
colon	UBERON:0001155	48.25	gold quality
minor salivary gland	UBERON:0001830	48.07	gold quality
uterine cervix	UBERON:0000002	48.00	gold quality
muscle layer of sigmoid colon	UBERON:0035805	47.93	gold quality
gastrocnemius	UBERON:0001388	47.79	gold quality
large intestine	UBERON:0000059	47.63	gold quality
cortex of kidney	UBERON:0001225	47.26	gold quality
intestine	UBERON:0000160	46.88	gold quality
right frontal lobe	UBERON:0002810	46.83	gold quality
rectum	UBERON:0001052	45.77	gold quality
left ovary	UBERON:0002119	45.71	silver quality
smooth muscle tissue	UBERON:0001135	45.48	gold quality
lower esophagus	UBERON:0013473	44.95	gold quality
esophagus	UBERON:0001043	44.68	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.71

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.