LINC02996

Summary

LINC02996 (long intergenic non-protein coding RNA 2996, HGNC:56112) is a long non-coding RNA gene on chromosome 5p13.1.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56112
Approved symbol	LINC02996
Name	long intergenic non-protein coding RNA 2996
Location	5p13.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00010315
Entrez	101926960
RNAcentral	URS000075C967 — lncRNA, 2007 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 1 (showing top): chr5p13

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000195620 (5:42163839 A>T), RS1000244582 (5:42168467 A>G), RS1000281517 (5:42170952 A>G), RS1000301421 (5:42158695 T>A,C), RS1000333909 (5:42158477 A>G), RS1000373054 (5:42173584 C>A,G), RS1000405733 (5:42173384 G>C), RS1000532871 (5:42176309 C>G), RS1000629700 (5:42163596 A>G), RS1000682602 (5:42161198 C>A,T), RS1000814674 (5:42164196 C>T), RS1001032397 (5:42169626 G>A), RS1001134772 (5:42175091 G>C), RS1001275372 (5:42176946 T>G), RS1001305054 (5:42173665 T>C,G)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.