LINC02997

Summary

LINC02997 (long intergenic non-protein coding RNA 2997, HGNC:56113) is a long non-coding RNA gene on chromosome 5q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56113
Approved symbol	LINC02997
Name	long intergenic non-protein coding RNA 2997
Location	5q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249364
Ensembl biotype	lncRNA
Entrez	101928858
RNAcentral	URS0000812103 — lncRNA, 1557 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 39 — 38 lncRNA, 1 retained_intron

ENST00000503106, ENST00000504068, ENST00000509947, ENST00000513234, ENST00000514368, ENST00000515227, ENST00000653448, ENST00000657280, ENST00000657465, ENST00000659965, ENST00000660391, ENST00000660629, ENST00000660658, ENST00000667775, ENST00000668508, ENST00000669333, ENST00000669367, ENST00000669754, ENST00000670004, ENST00000670173, ENST00000839003, ENST00000839004, ENST00000839005, ENST00000839006, ENST00000839007, ENST00000839008, ENST00000839009, ENST00000839010, ENST00000839011, ENST00000839012, ENST00000839013, ENST00000839014, ENST00000839015, ENST00000839016, ENST00000839017, ENST00000839018, ENST00000839019, ENST00000839020, ENST00000839021

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503106 — 4 exons

Exon	Start	End
ENSE00002031638	67619791	67619915
ENSE00002040938	67379378	67379628
ENSE00002042011	67774998	67775034
ENSE00002051077	67620146	67620289

Expression profiles

Bgee: expression breadth ubiquitous, 144 present calls, max score 87.04.

Top tissues by expression

236 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	87.04	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.06	gold quality
calcaneal tendon	UBERON:0003701	83.72	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.98	gold quality
liver	UBERON:0002107	79.22	gold quality
sural nerve	UBERON:0015488	75.56	gold quality
tibial nerve	UBERON:0001323	72.01	gold quality
right lung	UBERON:0002167	71.48	gold quality
gastrocnemius	UBERON:0001388	70.70	gold quality
muscle of leg	UBERON:0001383	70.01	gold quality
tendon	UBERON:0000043	67.99	gold quality
upper lobe of left lung	UBERON:0008952	67.37	gold quality
epithelium of nasopharynx	UBERON:0001951	67.10	gold quality
upper lobe of lung	UBERON:0008948	66.61	gold quality
right testis	UBERON:0004534	65.30	gold quality
bone marrow	UBERON:0002371	64.72	gold quality
lung	UBERON:0002048	64.28	gold quality
colonic epithelium	UBERON:0000397	64.21	silver quality
left testis	UBERON:0004533	63.79	gold quality
testis	UBERON:0000473	63.40	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.83	gold quality
buccal mucosa cell	CL:0002336	62.78	gold quality
superficial temporal artery	UBERON:0001614	61.84	gold quality
popliteal artery	UBERON:0002250	61.68	gold quality
tibial artery	UBERON:0007610	61.62	gold quality
mammary duct	UBERON:0001765	60.69	gold quality
mucosa of stomach	UBERON:0001199	59.98	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	59.80	gold quality
myocardium	UBERON:0002349	59.53	gold quality
tibia	UBERON:0000979	59.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.74

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.