LINC02998

Summary

LINC02998 (long intergenic non-protein coding RNA 2998, HGNC:56114) is a long non-coding RNA gene on chromosome 5q11.2.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56114
Approved symbol	LINC02998
Name	long intergenic non-protein coding RNA 2998
Location	5q11.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00010334
Entrez	102467080
RNAcentral	URS000075A65E — lncRNA, 821 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000003164 (5:54720617 G>T), RS1000015662 (5:54681765 A>G), RS1000053627 (5:54686444 T>C), RS1000064184 (5:54716093 A>G), RS1000066564 (5:54701100 C>A,T), RS1000163433 (5:54729147 G>A), RS1000234513 (5:54668653 T>A), RS1000254869 (5:54687495 A>G), RS1000284765 (5:54724104 A>C,G), RS1000311810 (5:54683287 T>A), RS1000390169 (5:54670474 C>A,G,T), RS1000408740 (5:54722119 GTTTTGTCT>G), RS1000472418 (5:54690420 T>C), RS1000492393 (5:54740115 C>T), RS1000591473 (5:54736278 G>A)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

CTD chemical–gene interactions

1 total (human), top 1 by PubMed support.

Chemical	Actions (top 5)	PubMed papers
Smoke	increases expression	1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.