LINC02999

Summary

LINC02999 (long intergenic non-protein coding RNA 2999, HGNC:56115) is a long non-coding RNA gene on chromosome 5q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56115
Approved symbol	LINC02999
Name	long intergenic non-protein coding RNA 2999
Location	5q31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250564
Ensembl biotype	lncRNA
Entrez	102546229
RNAcentral	URS00007599FD — lncRNA, 705 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000512748, ENST00000657528, ENST00000773224, ENST00000773225, ENST00000773226, ENST00000773227

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000512748 — 3 exons

Exon	Start	End
ENSE00002063769	134429051	134429627
ENSE00002075314	134429885	134429951
ENSE00002086550	134460591	134460615

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 89.70.

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.70	gold quality
cortical plate	UBERON:0005343	66.09	gold quality
placenta	UBERON:0001987	63.18	gold quality
liver	UBERON:0002107	63.12	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.36	gold quality
right lobe of liver	UBERON:0001114	61.69	gold quality
bone marrow	UBERON:0002371	59.35	gold quality
skeletal muscle tissue	UBERON:0001134	59.26	silver quality
blood	UBERON:0000178	57.10	gold quality
putamen	UBERON:0001874	56.45	gold quality
monocyte	CL:0000576	55.88	gold quality
leukocyte	CL:0000738	55.69	gold quality
prefrontal cortex	UBERON:0000451	55.24	gold quality
gall bladder	UBERON:0002110	55.22	gold quality
islet of Langerhans	UBERON:0000006	54.94	gold quality
calcaneal tendon	UBERON:0003701	54.94	gold quality
duodenum	UBERON:0002114	54.77	gold quality
caudate nucleus	UBERON:0001873	54.18	gold quality
nucleus accumbens	UBERON:0001882	53.05	gold quality
muscle of leg	UBERON:0001383	52.81	gold quality
gastrocnemius	UBERON:0001388	52.43	gold quality
mucosa of transverse colon	UBERON:0004991	52.40	gold quality
right atrium auricular region	UBERON:0006631	52.10	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	52.03	silver quality
primary visual cortex	UBERON:0002436	51.80	gold quality
mucosa of stomach	UBERON:0001199	51.73	gold quality
vermiform appendix	UBERON:0001154	51.29	gold quality
superior frontal gyrus	UBERON:0002661	50.73	gold quality
pancreas	UBERON:0001264	50.64	gold quality
lymph node	UBERON:0000029	50.41	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.