LINC03000

Summary

LINC03000 (long intergenic non-protein coding RNA 3000, HGNC:56116) is a long non-coding RNA gene on chromosome 5q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56116
Approved symbol	LINC03000
Name	long intergenic non-protein coding RNA 3000
Location	5q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241956
Ensembl biotype	lncRNA
Entrez	105377703
RNAcentral	URS0002A38A23 — lncRNA, 2018 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 45 — 45 lncRNA

ENST00000486913, ENST00000517508, ENST00000519267, ENST00000519327, ENST00000519329, ENST00000519570, ENST00000519750, ENST00000519901, ENST00000519904, ENST00000522303, ENST00000522646, ENST00000522686, ENST00000522762, ENST00000523648, ENST00000523704, ENST00000524297, ENST00000654428, ENST00000660218, ENST00000662226, ENST00000662566, ENST00000664544, ENST00000664809, ENST00000665085, ENST00000669047, ENST00000670703, ENST00000671513, ENST00000690593, ENST00000767693, ENST00000767694, ENST00000767695, ENST00000767696, ENST00000767697, ENST00000767698, ENST00000767699, ENST00000767700, ENST00000767701, ENST00000767702, ENST00000817252, ENST00000817253, ENST00000817254, ENST00000817255, ENST00000817256, ENST00000817257, ENST00000817258, ENST00000817259

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000486913 — 3 exons

Exon	Start	End
ENSE00001874836	164600975	164602434
ENSE00002040889	164354140	164354224
ENSE00002052335	164486669	164486741

Expression profiles

Bgee: expression breadth ubiquitous, 138 present calls, max score 92.35.

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.35	gold quality
buccal mucosa cell	CL:0002336	86.69	gold quality
colonic epithelium	UBERON:0000397	84.90	gold quality
bone marrow cell	CL:0002092	79.53	gold quality
oocyte	CL:0000023	79.07	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.67	gold quality
secondary oocyte	CL:0000655	74.83	gold quality
tibialis anterior	UBERON:0001385	71.48	silver quality
testis	UBERON:0000473	69.45	gold quality
left testis	UBERON:0004533	69.01	gold quality
pancreatic ductal cell	CL:0002079	68.69	silver quality
pituitary gland	UBERON:0000007	68.66	gold quality
adenohypophysis	UBERON:0002196	68.17	gold quality
right testis	UBERON:0004534	67.97	gold quality
cortical plate	UBERON:0005343	67.06	gold quality
sural nerve	UBERON:0015488	67.01	gold quality
ventricular zone	UBERON:0003053	66.21	gold quality
nucleus accumbens	UBERON:0001882	65.57	gold quality
ileal mucosa	UBERON:0000331	65.46	silver quality
ganglionic eminence	UBERON:0004023	64.30	gold quality
deltoid	UBERON:0001476	61.52	gold quality
caudate nucleus	UBERON:0001873	61.32	gold quality
adrenal tissue	UBERON:0018303	60.60	gold quality
prefrontal cortex	UBERON:0000451	59.89	gold quality
lower lobe of lung	UBERON:0008949	59.82	silver quality
metanephric glomerulus	UBERON:0004736	59.79	gold quality
monocyte	CL:0000576	59.75	gold quality
leukocyte	CL:0000738	59.56	gold quality
tonsil	UBERON:0002372	59.28	silver quality
primary visual cortex	UBERON:0002436	59.10	gold quality

Single-cell (SCXA)

Detected in 4 experiment(s), a significant marker in 4.

Experiment	Marker?	Max mean expression
E-GEOD-180759	yes	2150.31
E-HCAD-35	yes	1110.04
E-CURD-119	yes	28.74
E-ANND-3	yes	5.74

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.