LINC03001

Summary

LINC03001 (long intergenic non-protein coding RNA 3001, HGNC:56118) is a long non-coding RNA gene on chromosome 6p11.2.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56118
Approved symbol	LINC03001
Name	long intergenic non-protein coding RNA 3001
Location	6p11.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00011222
Entrez	100506188
RNAcentral	URS000075B82C — lncRNA, 1460 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000338469 (6:57260036 A>G), RS1001559192 (6:57261434 A>G), RS1001657653 (6:57261942 C>T), RS1002926962 (6:57260377 T>C), RS1003241532 (6:57262728 C>T), RS1003283658 (6:57260636 G>A,C), RS1004798558 (6:57264519 A>T), RS1004990364 (6:57265262 G>A), RS1005984769 (6:57260748 T>C), RS1006124828 (6:57261061 A>G), RS1006268975 (6:57263490 G>A,C), RS1007922495 (6:57265033 T>C), RS1008067206 (6:57261453 A>C), RS1008156777 (6:57261114 G>A), RS1008209710 (6:57262339 G>A)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

CTD chemical–gene interactions

1 total (human), top 1 by PubMed support.

Chemical	Actions (top 5)	PubMed papers
Smoke	increases expression	1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.