LINC03002

Summary

LINC03002 (long intergenic non-protein coding RNA 3002, HGNC:56123) is a long non-coding RNA gene on chromosome 6q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56123
Approved symbol	LINC03002
Name	long intergenic non-protein coding RNA 3002
Location	6q23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232310
Ensembl biotype	lncRNA
Entrez	101928304
RNAcentral	URS00007E3CC0 — lncRNA, 693 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000418837, ENST00000423028, ENST00000434593, ENST00000606039, ENST00000607531, ENST00000650393, ENST00000655921, ENST00000661776, ENST00000665080, ENST00000665479, ENST00000666071, ENST00000668030, ENST00000668248, ENST00000668477, ENST00000668549, ENST00000702656

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418837 — 4 exons

Exon	Start	End
ENSE00001680790	134530838	134531064
ENSE00003833912	134540089	134540336
ENSE00003871428	134540575	134540625
ENSE00003885009	134525329	134525543

Expression profiles

Bgee: expression breadth ubiquitous, 160 present calls, max score 92.11.

Top tissues by expression

242 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right atrium auricular region	UBERON:0006631	92.11	gold quality
cardiac atrium	UBERON:0002081	91.02	gold quality
secondary oocyte	CL:0000655	82.31	gold quality
cardiac muscle of right atrium	UBERON:0003379	82.31	silver quality
left ventricle myocardium	UBERON:0006566	81.50	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.81	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	78.25	gold quality
spinal cord	UBERON:0002240	76.33	gold quality
buccal mucosa cell	CL:0002336	74.64	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.84	gold quality
bone marrow cell	CL:0002092	71.32	gold quality
spleen	UBERON:0002106	70.60	gold quality
colonic epithelium	UBERON:0000397	70.35	gold quality
substantia nigra	UBERON:0002038	70.16	gold quality
putamen	UBERON:0001874	69.54	gold quality
prefrontal cortex	UBERON:0000451	68.89	gold quality
corpus callosum	UBERON:0002336	68.67	gold quality
midbrain	UBERON:0001891	68.60	gold quality
heart	UBERON:0000948	68.18	gold quality
pancreatic ductal cell	CL:0002079	67.94	silver quality
oocyte	CL:0000023	67.32	gold quality
Brodmann (1909) area 9	UBERON:0013540	67.23	gold quality
amygdala	UBERON:0001876	67.16	gold quality
right lung	UBERON:0002167	66.60	gold quality
left adrenal gland cortex	UBERON:0035825	66.52	gold quality
right adrenal gland cortex	UBERON:0035827	66.34	gold quality
ventricular zone	UBERON:0003053	66.31	gold quality
adrenal cortex	UBERON:0001235	65.82	gold quality
Ammon’s horn	UBERON:0001954	65.81	gold quality
metanephros cortex	UBERON:0010533	65.75	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	9.05

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.