LINC03004

Summary

LINC03004 (long intergenic non-protein coding RNA 3004, HGNC:56128) is a long non-coding RNA gene on chromosome 6q23.3.

Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex.

Source: NCBI Gene 102723649 — RefSeq curated summary.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56128
Approved symbol	LINC03004
Name	long intergenic non-protein coding RNA 3004
Location	6q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230533
Ensembl biotype	lncRNA
Entrez	102723649
RNAcentral	URS00007E3CB1 — lncRNA, 525 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 28 — 28 lncRNA

ENST00000440397, ENST00000635999, ENST00000638039, ENST00000642830, ENST00000646621, ENST00000656030, ENST00000666119, ENST00000669661, ENST00000671417, ENST00000691587, ENST00000692965, ENST00000746620, ENST00000746621, ENST00000746622, ENST00000746623, ENST00000746624, ENST00000746625, ENST00000746626, ENST00000746627, ENST00000746628, ENST00000746629, ENST00000746630, ENST00000746631, ENST00000746632, ENST00000746633, ENST00000821892, ENST00000821893, ENST00000821894

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000440397 — 3 exons

Exon	Start	End
ENSE00003884664	137673930	137674124
ENSE00004087719	137673375	137673635
ENSE00004087739	137674388	137674557

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 85.47.

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.47	gold quality
sural nerve	UBERON:0015488	82.01	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.13	gold quality
left testis	UBERON:0004533	68.50	gold quality
right testis	UBERON:0004534	68.13	gold quality
testis	UBERON:0000473	68.07	gold quality
corpus callosum	UBERON:0002336	64.23	gold quality
tonsil	UBERON:0002372	63.91	gold quality
islet of Langerhans	UBERON:0000006	63.74	gold quality
lower esophagus mucosa	UBERON:0035834	59.88	gold quality
ganglionic eminence	UBERON:0004023	59.13	gold quality
gall bladder	UBERON:0002110	59.12	gold quality
ectocervix	UBERON:0012249	58.11	gold quality
rectum	UBERON:0001052	57.36	gold quality
vermiform appendix	UBERON:0001154	57.20	gold quality
monocyte	CL:0000576	56.26	gold quality
lymph node	UBERON:0000029	55.95	gold quality
mucosa of transverse colon	UBERON:0004991	55.70	gold quality
calcaneal tendon	UBERON:0003701	55.45	gold quality
blood	UBERON:0000178	54.26	gold quality
transverse colon	UBERON:0001157	53.28	gold quality
left adrenal gland cortex	UBERON:0035825	53.12	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.07	gold quality
body of pancreas	UBERON:0001150	52.81	gold quality
bone marrow	UBERON:0002371	52.27	silver quality
liver	UBERON:0002107	51.91	gold quality
vagina	UBERON:0000996	51.80	gold quality
colon	UBERON:0001155	51.70	gold quality
right lobe of liver	UBERON:0001114	51.50	gold quality
left adrenal gland	UBERON:0001234	50.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.50

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.