LINC03007

Summary

LINC03007 (long intergenic non-protein coding RNA 3007, HGNC:56132) is a long non-coding RNA gene on chromosome 7p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56132
Approved symbol	LINC03007
Name	long intergenic non-protein coding RNA 3007
Location	7p15.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC005165.1, AC003090.1
Ensembl gene	ENSG00000223561
Ensembl biotype	lncRNA
Entrez	646588
RNAcentral	URS0000D7810A — lncRNA, 2030 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 53 — 53 lncRNA

ENST00000423689, ENST00000446840, ENST00000456777, ENST00000652885, ENST00000652906, ENST00000653559, ENST00000653704, ENST00000654115, ENST00000656871, ENST00000656897, ENST00000658568, ENST00000659238, ENST00000659634, ENST00000659793, ENST00000660499, ENST00000661813, ENST00000661881, ENST00000662377, ENST00000664945, ENST00000665149, ENST00000665954, ENST00000668233, ENST00000669861, ENST00000670917, ENST00000671106, ENST00000702191, ENST00000812178, ENST00000812179, ENST00000812180, ENST00000812181, ENST00000812182, ENST00000812183, ENST00000812184, ENST00000812185, ENST00000812186, ENST00000812187, ENST00000812188, ENST00000812189, ENST00000812190, ENST00000812191, ENST00000812192, ENST00000812193, ENST00000812197, ENST00000812198, ENST00000812203, ENST00000812205, ENST00000812206, ENST00000812207, ENST00000812208, ENST00000812210, ENST00000812212, ENST00000812213, ENST00000812214

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423689 — 3 exons

Exon	Start	End
ENSE00001670283	25655472	25658093
ENSE00001697821	25661670	25661731
ENSE00003859593	25662746	25663172

Expression profiles

Bgee: expression breadth ubiquitous, 163 present calls, max score 82.85.

Top tissues by expression

252 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
tibia	UBERON:0000979	82.85	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.82	silver quality
corpus epididymis	UBERON:0004359	81.68	gold quality
body of uterus	UBERON:0009853	80.42	gold quality
left uterine tube	UBERON:0001303	79.59	gold quality
parotid gland	UBERON:0001831	79.56	gold quality
saliva-secreting gland	UBERON:0001044	79.45	gold quality
right atrium auricular region	UBERON:0006631	79.26	gold quality
calcaneal tendon	UBERON:0003701	78.89	gold quality
cardiac atrium	UBERON:0002081	78.18	gold quality
minor salivary gland	UBERON:0001830	78.04	gold quality
skin of abdomen	UBERON:0001416	75.67	gold quality
tibial artery	UBERON:0007610	74.64	gold quality
popliteal artery	UBERON:0002250	74.63	gold quality
lower esophagus	UBERON:0013473	74.60	gold quality
lower esophagus muscularis layer	UBERON:0035833	74.56	gold quality
gall bladder	UBERON:0002110	73.85	gold quality
smooth muscle tissue	UBERON:0001135	73.74	gold quality
mouth mucosa	UBERON:0003729	73.64	gold quality
right ovary	UBERON:0002118	73.31	gold quality
left ovary	UBERON:0002119	73.22	gold quality
mucosa of stomach	UBERON:0001199	72.97	gold quality
muscle layer of sigmoid colon	UBERON:0035805	72.52	gold quality
myometrium	UBERON:0001296	72.49	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	72.16	gold quality
lower esophagus mucosa	UBERON:0035834	72.15	gold quality
left coronary artery	UBERON:0001626	72.10	gold quality
colonic epithelium	UBERON:0000397	71.65	gold quality
ileal mucosa	UBERON:0000331	71.62	silver quality
coronary artery	UBERON:0001621	70.97	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	9.18

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.