LINC03013

Summary

LINC03013 (long intergenic non-protein coding RNA 3013, HGNC:56140) is a long non-coding RNA gene on chromosome 7p14.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56140
Approved symbol	LINC03013
Name	long intergenic non-protein coding RNA 3013
Location	7p14.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227544
Ensembl biotype	lncRNA
Entrez	100506725
RNAcentral	URS000075CE88 — lncRNA, 1189 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000430518, ENST00000432866, ENST00000449644, ENST00000458087, ENST00000585952, ENST00000652195, ENST00000653933, ENST00000654146, ENST00000654982, ENST00000656399, ENST00000659010, ENST00000659906, ENST00000668139, ENST00000669772, ENST00000670851, ENST00000736493

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430518 — 3 exons

Exon	Start	End
ENSE00001593079	35719070	35719708
ENSE00002772517	35716403	35716868
ENSE00003881283	35715075	35715169

Expression profiles

Bgee: expression breadth ubiquitous, 180 present calls, max score 96.04.

Top tissues by expression

248 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	96.04	gold quality
inferior vagus X ganglion	UBERON:0005363	94.63	gold quality
subthalamic nucleus	UBERON:0001906	93.17	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	92.26	gold quality
spinal cord	UBERON:0002240	91.70	gold quality
substantia nigra	UBERON:0002038	91.29	gold quality
midbrain	UBERON:0001891	91.13	gold quality
medulla oblongata	UBERON:0001896	90.76	gold quality
dorsal plus ventral thalamus	UBERON:0001897	90.35	gold quality
pons	UBERON:0000988	89.80	gold quality
superior vestibular nucleus	UBERON:0007227	89.65	gold quality
amygdala	UBERON:0001876	88.63	gold quality
ventral tegmental area	UBERON:0002691	88.50	gold quality
putamen	UBERON:0001874	88.36	gold quality
Ammon’s horn	UBERON:0001954	88.35	gold quality
lateral globus pallidus	UBERON:0002476	86.60	gold quality
substantia nigra pars reticulata	UBERON:0001966	86.56	gold quality
caudate nucleus	UBERON:0001873	85.51	gold quality
hypothalamus	UBERON:0001898	85.50	gold quality
Brodmann (1909) area 46	UBERON:0006483	85.36	gold quality
Brodmann (1909) area 9	UBERON:0013540	85.05	gold quality
substantia nigra pars compacta	UBERON:0001965	84.28	gold quality
nucleus accumbens	UBERON:0001882	83.62	gold quality
globus pallidus	UBERON:0001875	83.55	gold quality
temporal lobe	UBERON:0001871	83.35	gold quality
prefrontal cortex	UBERON:0000451	83.22	gold quality
medial globus pallidus	UBERON:0002477	82.15	gold quality
postcentral gyrus	UBERON:0002581	81.55	gold quality
parietal lobe	UBERON:0001872	81.49	gold quality
frontal cortex	UBERON:0001870	80.79	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.55
E-MTAB-9543	no	1.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.