LINC03016

Summary

LINC03016 (long intergenic non-protein coding RNA 3016, HGNC:56145) is a long non-coding RNA gene on chromosome 7p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56145
Approved symbol	LINC03016
Name	long intergenic non-protein coding RNA 3016
Location	7p21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230825
Ensembl biotype	lncRNA
Entrez	101927354
RNAcentral	URS000075A852 — lncRNA, 761 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 11 lncRNA, 1 retained_intron

ENST00000430266, ENST00000436578, ENST00000447039, ENST00000655022, ENST00000657192, ENST00000659742, ENST00000755044, ENST00000755045, ENST00000755046, ENST00000755047, ENST00000755048, ENST00000755049

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430266 — 4 exons

Exon	Start	End
ENSE00001609365	7267237	7267442
ENSE00001738014	7255154	7255178
ENSE00001753997	7259552	7259596
ENSE00003866667	7277585	7278071

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 94.67.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
lower esophagus mucosa	UBERON:0035834	94.67	gold quality
esophagus mucosa	UBERON:0002469	86.85	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.95	gold quality
placenta	UBERON:0001987	76.03	gold quality
sural nerve	UBERON:0015488	71.12	gold quality
esophagus	UBERON:0001043	71.06	gold quality
ectocervix	UBERON:0012249	69.88	gold quality
islet of Langerhans	UBERON:0000006	67.03	gold quality
skeletal muscle tissue	UBERON:0001134	66.23	gold quality
cortical plate	UBERON:0005343	66.06	gold quality
ventricular zone	UBERON:0003053	64.46	gold quality
ganglionic eminence	UBERON:0004023	63.35	gold quality
corpus callosum	UBERON:0002336	62.43	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.91	gold quality
blood	UBERON:0000178	60.44	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.41	gold quality
granulocyte	CL:0000094	59.28	gold quality
tonsil	UBERON:0002372	59.22	gold quality
calcaneal tendon	UBERON:0003701	59.05	gold quality
leukocyte	CL:0000738	59.03	gold quality
monocyte	CL:0000576	58.97	gold quality
mucosa of transverse colon	UBERON:0004991	58.81	gold quality
muscle of leg	UBERON:0001383	58.66	gold quality
gastrocnemius	UBERON:0001388	58.56	gold quality
saliva-secreting gland	UBERON:0001044	58.34	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	58.22	gold quality
minor salivary gland	UBERON:0001830	58.21	gold quality
prefrontal cortex	UBERON:0000451	58.00	gold quality
vagina	UBERON:0000996	57.87	gold quality
skin of leg	UBERON:0001511	57.87	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.