LINC03017

Summary

LINC03017 (long intergenic non-protein coding RNA 3017, HGNC:56146) is a long non-coding RNA gene on chromosome 7q21.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56146
Approved symbol	LINC03017
Name	long intergenic non-protein coding RNA 3017
Location	7q21.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235139
Ensembl biotype	lncRNA
Entrez	101927378
RNAcentral	URS0000434011 — lncRNA, 4104 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000446000, ENST00000450977, ENST00000775960, ENST00000775961, ENST00000775962, ENST00000775963, ENST00000775964, ENST00000775965, ENST00000775966, ENST00000775967, ENST00000775968, ENST00000775969

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446000 — 4 exons

Exon	Start	End
ENSE00001625956	84549147	84549253
ENSE00001699761	84570979	84571107
ENSE00004143289	84584151	84584322
ENSE00004143292	84502453	84502534

Expression profiles

Bgee: expression breadth broad, 40 present calls, max score 77.00.

Top tissues by expression

40 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.00	gold quality
blood	UBERON:0000178	65.30	gold quality
liver	UBERON:0002107	64.38	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	63.90	gold quality
kidney	UBERON:0002113	61.12	gold quality
adult mammalian kidney	UBERON:0000082	60.39	gold quality
metanephros cortex	UBERON:0010533	60.27	gold quality
adrenal tissue	UBERON:0018303	59.18	gold quality
cortex of kidney	UBERON:0001225	58.09	gold quality
substantia nigra	UBERON:0002038	56.68	gold quality
thoracic mammary gland	UBERON:0005200	56.66	gold quality
prefrontal cortex	UBERON:0000451	56.10	gold quality
placenta	UBERON:0001987	55.55	gold quality
monocyte	CL:0000576	54.92	gold quality
calcaneal tendon	UBERON:0003701	53.80	silver quality
tibial artery	UBERON:0007610	52.95	gold quality
muscle layer of sigmoid colon	UBERON:0035805	50.98	gold quality
body of pancreas	UBERON:0001150	50.07	gold quality
body of stomach	UBERON:0001161	47.96	gold quality
testis	UBERON:0000473	47.62	gold quality
lower esophagus	UBERON:0013473	46.64	gold quality
heart left ventricle	UBERON:0002084	46.46	gold quality
lower esophagus muscularis layer	UBERON:0035833	46.45	gold quality
transverse colon	UBERON:0001157	46.33	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	46.30	gold quality
subcutaneous adipose tissue	UBERON:0002190	46.22	gold quality
gastrocnemius	UBERON:0001388	46.01	gold quality
omental fat pad	UBERON:0010414	45.94	gold quality
nucleus accumbens	UBERON:0001882	45.77	gold quality
skin of leg	UBERON:0001511	45.17	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	24.00
E-ANND-3	yes	2.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.