LINC03021

Summary

LINC03021 (long intergenic non-protein coding RNA 3021, HGNC:56149) is a long non-coding RNA gene on chromosome 8p23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56149
Approved symbol	LINC03021
Name	long intergenic non-protein coding RNA 3021
Location	8p23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254319
Ensembl biotype	lncRNA
Entrez	101927815
RNAcentral	URS00007E3B3C — lncRNA, 682 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 74 — 74 lncRNA

ENST00000517357, ENST00000517984, ENST00000519393, ENST00000520570, ENST00000520842, ENST00000523971, ENST00000654513, ENST00000654884, ENST00000655416, ENST00000655522, ENST00000658181, ENST00000659324, ENST00000664965, ENST00000665048, ENST00000666066, ENST00000671533, ENST00000725400, ENST00000725401, ENST00000725402, ENST00000725403, ENST00000725404, ENST00000725405, ENST00000725406, ENST00000725407, ENST00000725408, ENST00000725409, ENST00000725410, ENST00000725411, ENST00000725412, ENST00000725413, ENST00000725414, ENST00000725415, ENST00000725416, ENST00000725417, ENST00000725418, ENST00000725419, ENST00000725420, ENST00000725421, ENST00000725422, ENST00000725423, ENST00000725424, ENST00000725425, ENST00000725426, ENST00000725427, ENST00000725428, ENST00000725429, ENST00000725430, ENST00000725431, ENST00000725432, ENST00000725433, ENST00000725434, ENST00000725435, ENST00000725436, ENST00000725437, ENST00000725438, ENST00000725439, ENST00000725440, ENST00000725441, ENST00000725442, ENST00000725443, ENST00000725444, ENST00000725445, ENST00000725446, ENST00000725447, ENST00000725448, ENST00000725449, ENST00000725450, ENST00000725451, ENST00000725452, ENST00000725453, ENST00000725454, ENST00000725455, ENST00000725456, ENST00000725457

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517357 — 6 exons

Exon	Start	End
ENSE00002098887	2674730	2674845
ENSE00002111252	2678857	2678939
ENSE00002117845	2705215	2705286
ENSE00002129059	2728330	2728419
ENSE00002137212	2669781	2670009
ENSE00004048981	2665908	2666188

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 82.61.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.61	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.75	gold quality
ventricular zone	UBERON:0003053	73.36	gold quality
ganglionic eminence	UBERON:0004023	71.96	gold quality
adrenal tissue	UBERON:0018303	70.36	gold quality
bone marrow	UBERON:0002371	68.90	gold quality
bone marrow cell	CL:0002092	68.77	silver quality
mucosa of transverse colon	UBERON:0004991	68.61	gold quality
colonic epithelium	UBERON:0000397	68.09	silver quality
cortical plate	UBERON:0005343	67.57	gold quality
endometrium	UBERON:0001295	67.28	gold quality
rectum	UBERON:0001052	65.83	gold quality
kidney	UBERON:0002113	64.61	gold quality
smooth muscle tissue	UBERON:0001135	62.33	gold quality
testis	UBERON:0000473	62.19	gold quality
adult mammalian kidney	UBERON:0000082	61.96	gold quality
right testis	UBERON:0004534	61.76	gold quality
calcaneal tendon	UBERON:0003701	61.62	gold quality
sural nerve	UBERON:0015488	61.59	silver quality
cortex of kidney	UBERON:0001225	61.02	gold quality
cerebellar cortex	UBERON:0002129	60.41	gold quality
cerebellum	UBERON:0002037	60.36	gold quality
cerebellar hemisphere	UBERON:0002245	60.35	gold quality
duodenum	UBERON:0002114	59.94	gold quality
tonsil	UBERON:0002372	59.92	gold quality
left testis	UBERON:0004533	59.91	gold quality
right hemisphere of cerebellum	UBERON:0014890	59.64	gold quality
leukocyte	CL:0000738	59.37	gold quality
monocyte	CL:0000576	59.10	gold quality
lymph node	UBERON:0000029	58.93	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.