LINC03025

Summary

LINC03025 (long intergenic non-protein coding RNA 3025, HGNC:56158) is a long non-coding RNA gene on chromosome 9p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56158
Approved symbol	LINC03025
Name	long intergenic non-protein coding RNA 3025
Location	9p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000276462
Ensembl biotype	lncRNA
Entrez	440896
RNAcentral	URS0000BC460F — lncRNA, 3200 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000619971, ENST00000620833, ENST00000653478, ENST00000655709, ENST00000669967, ENST00000671340, ENST00000671415, ENST00000837312, ENST00000837313

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000619971 — 6 exons

Exon	Start	End
ENSE00003719302	41102731	41102841
ENSE00003719851	41103685	41105159
ENSE00003732612	41100794	41101294
ENSE00003851567	41109276	41109434
ENSE00003852455	41107594	41107741
ENSE00003873283	41106165	41106388

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 94.80.

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	94.80	gold quality
left testis	UBERON:0004533	93.71	gold quality
right testis	UBERON:0004534	93.22	gold quality
testis	UBERON:0000473	92.54	gold quality
Ammon’s horn	UBERON:0001954	86.56	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.74	gold quality
superior frontal gyrus	UBERON:0002661	79.68	gold quality
right frontal lobe	UBERON:0002810	77.02	gold quality
Brodmann (1909) area 9	UBERON:0013540	76.25	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	75.49	gold quality
bone marrow cell	CL:0002092	75.27	gold quality
cerebral cortex	UBERON:0000956	74.49	gold quality
anterior cingulate cortex	UBERON:0009835	73.21	gold quality
frontal cortex	UBERON:0001870	69.63	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	67.76	gold quality
primary visual cortex	UBERON:0002436	67.57	gold quality
temporal lobe	UBERON:0001871	66.12	gold quality
amygdala	UBERON:0001876	66.01	gold quality
vermiform appendix	UBERON:0001154	64.42	gold quality
right hemisphere of cerebellum	UBERON:0014890	64.29	gold quality
fallopian tube	UBERON:0003889	64.11	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.30	gold quality
brain	UBERON:0000955	63.25	gold quality
prefrontal cortex	UBERON:0000451	62.31	gold quality
bone marrow	UBERON:0002371	60.32	gold quality
ventricular zone	UBERON:0003053	59.80	silver quality
sural nerve	UBERON:0015488	59.30	silver quality
lymph node	UBERON:0000029	58.55	gold quality
muscle tissue	UBERON:0002385	57.92	gold quality
multicellular organism	UBERON:0000468	56.30	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.