LINC03030

Summary

LINC03030 (long intergenic non-protein coding RNA 3030, HGNC:56171) is a long non-coding RNA gene on chromosome 11q14.1.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56171
Approved symbol	LINC03030
Name	long intergenic non-protein coding RNA 3030
Location	11q14.1
Locus type	RNA, long non-coding
Status	Approved
Entrez	646029
RNAcentral	URS00008121B5 — lncRNA, 1845 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Long noncoding RNA LOC646029 functions as a ceRNA to suppress ovarian cancer progression through the miR-627-3p/SPRED1 axis. (PMID:37434064)

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000814472 (11:77571936 A>G), RS1000880308 (11:77570804 C>T), RS1001964250 (11:77571820 C>T), RS1002221309 (11:77573029 G>A,C), RS1002482079 (11:77574345 C>T), RS1002832031 (11:77574581 G>A,C), RS1002891872 (11:77573289 C>T), RS1002967251 (11:77572999 G>A), RS1003996791 (11:77574488 G>A), RS1004385911 (11:77572997 C>T), RS1004795324 (11:77574087 G>A), RS1004854761 (11:77569663 C>T), RS1005007335 (11:77576026 C>T), RS1005327621 (11:77569407 A>C), RS1005352564 (11:77575733 A>G)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.