LINC03039

Summary

LINC03039 (long intergenic non-protein coding RNA 3039, HGNC:56234) is a long non-coding RNA gene on chromosome 21q22.3.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56234
Approved symbol	LINC03039
Name	long intergenic non-protein coding RNA 3039
Location	21q22.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	lncSIK1
Entrez	105377137
RNAcentral	URS00025E34F9 — lncRNA, 5403 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000478931 (21:43399648 A>C), RS1000510360 (21:43394741 A>C), RS1002153034 (21:43391071 C>T), RS1002957920 (21:43395934 T>C), RS1003791 (21:43390922 C>T), RS1003792 (21:43390876 G>C,T), RS1004210361 (21:43389152 C>T), RS1004685114 (21:43399421 G>A), RS1005981225 (21:43401316 C>T), RS1006364902 (21:43398538 G>A), RS1006666174 (21:43394024 GAA>G,GAAAA,GAAAAAA), RS1007818388 (21:43398825 C>T), RS1008870449 (21:43399460 A>C), RS1009121204 (21:43395626 C>T), RS1009493489 (21:43397720 C>T)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.