LINC03041

Summary

LINC03041 (long intergenic non-protein coding RNA 3041, HGNC:19054) is a long non-coding RNA gene on chromosome 9p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:19054
Approved symbol	LINC03041
Name	long intergenic non-protein coding RNA 3041
Location	9p22.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	Em:AL513424.1
Ensembl gene	ENSG00000205549
Ensembl biotype	lncRNA
Entrez	100129385
RNAcentral	URS0000DB9E82 — lncRNA, 379 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000380685, ENST00000433347, ENST00000648575, ENST00000824553

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000380685 — 4 exons

Exon	Start	End
ENSE00001485875	16203935	16204038
ENSE00001485881	16276231	16276313
ENSE00003542469	16215772	16215899
ENSE00003835302	16215216	16215279

Expression profiles

Bgee: expression breadth ubiquitous, 102 present calls, max score 88.15.

Top tissues by expression

102 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.15	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.69	gold quality
ganglionic eminence	UBERON:0004023	66.91	gold quality
gall bladder	UBERON:0002110	66.86	gold quality
tonsil	UBERON:0002372	66.47	silver quality
lymph node	UBERON:0000029	64.47	gold quality
myometrium	UBERON:0001296	62.08	gold quality
muscle tissue	UBERON:0002385	61.71	gold quality
prefrontal cortex	UBERON:0000451	60.74	gold quality
duodenum	UBERON:0002114	60.10	gold quality
body of uterus	UBERON:0009853	59.66	gold quality
islet of Langerhans	UBERON:0000006	59.60	gold quality
monocyte	CL:0000576	59.56	gold quality
vermiform appendix	UBERON:0001154	58.00	gold quality
kidney	UBERON:0002113	57.73	gold quality
prostate gland	UBERON:0002367	57.71	gold quality
smooth muscle tissue	UBERON:0001135	57.67	gold quality
cortex of kidney	UBERON:0001225	56.68	gold quality
adult mammalian kidney	UBERON:0000082	56.16	gold quality
blood	UBERON:0000178	56.06	gold quality
urinary bladder	UBERON:0001255	55.07	gold quality
tibial nerve	UBERON:0001323	54.47	gold quality
descending thoracic aorta	UBERON:0002345	53.82	gold quality
muscle layer of sigmoid colon	UBERON:0035805	53.56	gold quality
liver	UBERON:0002107	53.20	silver quality
thyroid gland	UBERON:0002046	53.15	gold quality
corpus callosum	UBERON:0002336	52.87	gold quality
right uterine tube	UBERON:0001302	52.83	gold quality
gastrocnemius	UBERON:0001388	52.68	gold quality
left ovary	UBERON:0002119	52.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.94

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Case Report: Fusion of the HMGA2 and C9orf92 genes in myolipoma with t(9;12)(p22;q14). (PMID:26857357)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.