LINC03046

Summary

LINC03046 (long intergenic non-protein coding RNA 3046, HGNC:56262) is a long non-coding RNA gene on chromosome 10q24.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56262
Approved symbol	LINC03046
Name	long intergenic non-protein coding RNA 3046
Location	10q24.32
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC010789.1
Ensembl gene	ENSG00000224817
Ensembl biotype	lncRNA
Entrez	125775240
RNAcentral	URS00026A25D9 — lncRNA, 946 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000458489, ENST00000664847, ENST00000670664, ENST00000738823, ENST00000738824, ENST00000738825, ENST00000738826, ENST00000738827, ENST00000738828, ENST00000738829, ENST00000738830

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000458489 — 4 exons

Exon	Start	End
ENSE00001741750	101708165	101708401
ENSE00003873953	101701994	101702295
ENSE00004074338	101729753	101730076
ENSE00004074339	101704453	101704705

Expression profiles

Bgee: expression breadth broad, 89 present calls, max score 86.50.

Top tissues by expression

89 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.50	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.00	gold quality
metanephros cortex	UBERON:0010533	70.56	gold quality
cortex of kidney	UBERON:0001225	69.80	gold quality
placenta	UBERON:0001987	68.51	gold quality
kidney	UBERON:0002113	63.17	gold quality
adult mammalian kidney	UBERON:0000082	62.55	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	61.79	gold quality
sural nerve	UBERON:0015488	59.62	silver quality
hindlimb stylopod muscle	UBERON:0004252	57.54	gold quality
calcaneal tendon	UBERON:0003701	57.42	gold quality
skeletal muscle tissue	UBERON:0001134	55.23	gold quality
blood	UBERON:0000178	53.66	gold quality
body of uterus	UBERON:0009853	53.44	gold quality
prefrontal cortex	UBERON:0000451	52.95	gold quality
corpus callosum	UBERON:0002336	52.12	gold quality
ectocervix	UBERON:0012249	51.41	gold quality
myometrium	UBERON:0001296	51.19	gold quality
duodenum	UBERON:0002114	51.17	gold quality
muscle of leg	UBERON:0001383	50.99	gold quality
lymph node	UBERON:0000029	50.66	silver quality
ovary	UBERON:0000992	50.14	gold quality
gastrocnemius	UBERON:0001388	50.11	gold quality
endometrium	UBERON:0001295	50.02	gold quality
islet of Langerhans	UBERON:0000006	49.20	gold quality
heart left ventricle	UBERON:0002084	48.99	gold quality
vagina	UBERON:0000996	48.67	gold quality
body of pancreas	UBERON:0001150	48.64	gold quality
vermiform appendix	UBERON:0001154	48.52	gold quality
omental fat pad	UBERON:0010414	47.96	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.