LINC03047

Summary

LINC03047 (long intergenic non-protein coding RNA 3047, HGNC:56265) is a long non-coding RNA gene on chromosome 8q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56265
Approved symbol	LINC03047
Name	long intergenic non-protein coding RNA 3047
Location	8q22.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	KB-1980E6.3
Ensembl gene	ENSG00000253633
Ensembl biotype	lncRNA
Entrez	107986898
RNAcentral	URS0000EF51F5 — lncRNA, 1641 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000519630, ENST00000523572, ENST00000659499, ENST00000747959, ENST00000747960, ENST00000747961

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000519630 — 4 exons

Exon	Start	End
ENSE00002091027	102533755	102533865
ENSE00002117474	102535733	102535960
ENSE00002117694	102538384	102538668
ENSE00002118810	102528740	102528855

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 79.66.

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.66	gold quality
bone marrow cell	CL:0002092	78.89	gold quality
cortical plate	UBERON:0005343	77.31	gold quality
nucleus accumbens	UBERON:0001882	72.56	gold quality
ganglionic eminence	UBERON:0004023	70.37	gold quality
putamen	UBERON:0001874	69.78	gold quality
prefrontal cortex	UBERON:0000451	69.36	gold quality
caudate nucleus	UBERON:0001873	69.35	gold quality
superior frontal gyrus	UBERON:0002661	68.88	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	68.38	gold quality
Brodmann (1909) area 9	UBERON:0013540	68.24	gold quality
frontal cortex	UBERON:0001870	67.88	gold quality
bone marrow	UBERON:0002371	67.57	gold quality
ventricular zone	UBERON:0003053	67.26	gold quality
lymph node	UBERON:0000029	67.19	gold quality
tonsil	UBERON:0002372	67.18	gold quality
cerebral cortex	UBERON:0000956	66.65	gold quality
right frontal lobe	UBERON:0002810	65.77	gold quality
anterior cingulate cortex	UBERON:0009835	65.70	gold quality
stromal cell of endometrium	CL:0002255	65.14	gold quality
brain	UBERON:0000955	63.83	gold quality
calcaneal tendon	UBERON:0003701	63.49	gold quality
temporal lobe	UBERON:0001871	62.79	gold quality
amygdala	UBERON:0001876	62.57	gold quality
vermiform appendix	UBERON:0001154	62.38	gold quality
Ammon’s horn	UBERON:0001954	61.34	gold quality
duodenum	UBERON:0002114	61.31	gold quality
spleen	UBERON:0002106	59.55	gold quality
right uterine tube	UBERON:0001302	59.22	gold quality
skeletal muscle tissue	UBERON:0001134	58.91	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.20

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.