LINC03048

Summary

LINC03048 (long intergenic non-protein coding RNA 3048, HGNC:56272) is a long non-coding RNA gene on chromosome 17q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56272
Approved symbol	LINC03048
Name	long intergenic non-protein coding RNA 3048
Location	17q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000262223
Ensembl biotype	lncRNA
Entrez	100130370
RNAcentral	URS0000EEAC9B — lncRNA, 1250 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 25 — 25 lncRNA

ENST00000570301, ENST00000570929, ENST00000572077, ENST00000572301, ENST00000574041, ENST00000612902, ENST00000648736, ENST00000655200, ENST00000659293, ENST00000664400, ENST00000664998, ENST00000669395, ENST00000685160, ENST00000692826, ENST00000701276, ENST00000701571, ENST00000702079, ENST00000742368, ENST00000742369, ENST00000742370, ENST00000742371, ENST00000742372, ENST00000742373, ENST00000742374, ENST00000742375

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000570301 — 5 exons

Exon	Start	End
ENSE00002631225	81379722	81379881
ENSE00002659102	81380485	81380584
ENSE00002671101	81384946	81385174
ENSE00004080181	81375254	81376173
ENSE00004080197	81385292	81385382

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 91.84.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
putamen	UBERON:0001874	91.84	gold quality
Ammon’s horn	UBERON:0001954	90.37	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	89.69	gold quality
substantia nigra	UBERON:0002038	89.27	gold quality
temporal lobe	UBERON:0001871	89.06	gold quality
amygdala	UBERON:0001876	89.03	gold quality
caudate nucleus	UBERON:0001873	88.66	gold quality
corpus callosum	UBERON:0002336	86.64	gold quality
nucleus accumbens	UBERON:0001882	84.84	gold quality
right frontal lobe	UBERON:0002810	84.45	gold quality
Brodmann (1909) area 9	UBERON:0013540	84.45	gold quality
hypothalamus	UBERON:0001898	82.90	gold quality
primary visual cortex	UBERON:0002436	82.38	gold quality
sural nerve	UBERON:0015488	82.34	gold quality
right hemisphere of cerebellum	UBERON:0014890	81.72	gold quality
cerebral cortex	UBERON:0000956	81.36	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	81.24	gold quality
brain	UBERON:0000955	80.95	gold quality
cerebellar hemisphere	UBERON:0002245	80.95	gold quality
cerebellar cortex	UBERON:0002129	80.79	gold quality
cerebellum	UBERON:0002037	80.73	gold quality
anterior cingulate cortex	UBERON:0009835	79.41	gold quality
frontal cortex	UBERON:0001870	79.28	gold quality
prefrontal cortex	UBERON:0000451	75.85	gold quality
superior frontal gyrus	UBERON:0002661	75.28	gold quality
mucosa of stomach	UBERON:0001199	69.74	gold quality
tibial nerve	UBERON:0001323	69.49	gold quality
skin of leg	UBERON:0001511	69.06	gold quality
zone of skin	UBERON:0000014	68.28	gold quality
skin of abdomen	UBERON:0001416	66.90	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.