LINC03051

Summary

LINC03051 (long intergenic non-protein coding RNA 3051, HGNC:56330) is a protein-coding gene on chromosome 3q13.32.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56330
Approved symbol	LINC03051
Name	long intergenic non-protein coding RNA 3051
Location	3q13.32
Locus type	RNA, long non-coding
Status	Approved
Aliases	Lnc-LSAMP-1
Ensembl gene	ENSG00000239268
Ensembl biotype	protein_coding
Entrez	127138867
RNAcentral	URS0000EF42C9 — lncRNA, 1077 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 4 protein_coding_CDS_not_defined, 1 protein_coding

ENST00000484092, ENST00000665851, ENST00000688134, ENST00000717944, ENST00000717945

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000484092 — 2 exons

Exon	Start	End
ENSE00001851883	117997182	117997592
ENSE00001952804	117672154	117672296

Expression profiles

Bgee: expression breadth ubiquitous, 123 present calls, max score 94.18.

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	94.18	gold quality
corpus callosum	UBERON:0002336	90.97	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.84	gold quality
superior frontal gyrus	UBERON:0002661	81.62	gold quality
prefrontal cortex	UBERON:0000451	81.13	gold quality
cortical plate	UBERON:0005343	78.33	gold quality
frontal cortex	UBERON:0001870	76.48	gold quality
ventricular zone	UBERON:0003053	76.25	gold quality
adrenal tissue	UBERON:0018303	75.81	gold quality
anterior cingulate cortex	UBERON:0009835	74.39	gold quality
cerebral cortex	UBERON:0000956	74.29	gold quality
caudate nucleus	UBERON:0001873	74.08	gold quality
right adrenal gland cortex	UBERON:0035827	73.89	gold quality
primary visual cortex	UBERON:0002436	73.23	gold quality
adrenal gland	UBERON:0002369	73.16	gold quality
nucleus accumbens	UBERON:0001882	73.05	gold quality
putamen	UBERON:0001874	72.79	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	72.26	gold quality
temporal lobe	UBERON:0001871	71.85	gold quality
left adrenal gland	UBERON:0001234	71.79	gold quality
amygdala	UBERON:0001876	71.64	gold quality
right adrenal gland	UBERON:0001233	71.40	gold quality
Ammon’s horn	UBERON:0001954	71.34	gold quality
hypothalamus	UBERON:0001898	70.83	gold quality
left adrenal gland cortex	UBERON:0035825	70.25	gold quality
Brodmann (1909) area 9	UBERON:0013540	69.60	gold quality
brain	UBERON:0000955	69.21	gold quality
sural nerve	UBERON:0015488	69.13	gold quality
right frontal lobe	UBERON:0002810	68.53	gold quality
ganglionic eminence	UBERON:0004023	68.21	gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-HCAD-35	yes	91.68
E-HCAD-25	yes	14.92
E-ANND-3	no	3.06

Regulation

Is transcription factor: no

Cross-species orthologs

1 orthologs

Organism	Symbol	Gene ID
mus_musculus	LINC03051	ENSMUSG00000121927

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 5 (showing top): chr3q13, DESCARTES_FETAL_EYE_LENS_FIBRE_CELLS, DESCARTES_FETAL_LIVER_MESOTHELIAL_CELLS, DESCARTES_FETAL_SPLEEN_STROMAL_CELLS, ZBED5_TARGET_GENES

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.