LINC03053

Summary

LINC03053 (long intergenic non-protein coding RNA 3053, HGNC:56342) is a long non-coding RNA gene on chromosome Xp11.4.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56342
Approved symbol	LINC03053
Name	long intergenic non-protein coding RNA 3053
Location	Xp11.4
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC092198.1
Ensembl gene	ENSG00000223486
Ensembl biotype	lncRNA
Entrez	124905179
RNAcentral	URS00005D2A4F — lncRNA, 2691 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000447651, ENST00000689886, ENST00000689915, ENST00000717299, ENST00000717300, ENST00000717301, ENST00000717302, ENST00000790318, ENST00000790319, ENST00000790320, ENST00000790321

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000447651 — 2 exons

Exon	Start	End
ENSE00004032159	40009276	40009801
ENSE00004032160	40010018	40012182

Expression profiles

Bgee: expression breadth broad, 63 present calls, max score 84.38.

Top tissues by expression

63 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.38	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.90	gold quality
ganglionic eminence	UBERON:0004023	58.76	gold quality
monocyte	CL:0000576	54.57	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.77	silver quality
right uterine tube	UBERON:0001302	51.82	gold quality
prefrontal cortex	UBERON:0000451	51.76	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	50.19	gold quality
bone marrow	UBERON:0002371	48.33	silver quality
placenta	UBERON:0001987	47.97	gold quality
blood	UBERON:0000178	47.47	silver quality
muscle of leg	UBERON:0001383	46.90	silver quality
islet of Langerhans	UBERON:0000006	46.56	silver quality
duodenum	UBERON:0002114	46.43	silver quality
superior frontal gyrus	UBERON:0002661	44.73	silver quality
stomach	UBERON:0000945	44.66	gold quality
gastrocnemius	UBERON:0001388	44.19	silver quality
body of stomach	UBERON:0001161	44.11	gold quality
endometrium	UBERON:0001295	43.44	silver quality
fallopian tube	UBERON:0003889	43.34	gold quality
adrenal gland	UBERON:0002369	43.08	silver quality
heart	UBERON:0000948	42.36	silver quality
heart left ventricle	UBERON:0002084	42.30	silver quality
cerebral cortex	UBERON:0000956	42.20	silver quality
right atrium auricular region	UBERON:0006631	42.13	silver quality
multicellular organism	UBERON:0000468	42.10	gold quality
Brodmann (1909) area 9	UBERON:0013540	42.08	silver quality
left adrenal gland cortex	UBERON:0035825	41.33	silver quality
omental fat pad	UBERON:0010414	41.22	silver quality
adipose tissue	UBERON:0001013	41.19	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.