LINC03054

Summary

LINC03054 (long intergenic non-protein coding RNA 3054, HGNC:56349) is a long non-coding RNA gene on chromosome 8q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56349
Approved symbol	LINC03054
Name	long intergenic non-protein coding RNA 3054
Location	8q11.21
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC022915.1
Ensembl gene	ENSG00000253455
Ensembl biotype	lncRNA
Entrez	101929217
RNAcentral	URS000075F069 — lncRNA, 386 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000521660, ENST00000795396, ENST00000795397

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000521660 — 2 exons

Exon	Start	End
ENSE00004180073	48620251	48620529
ENSE00004180079	48623672	48623907

Expression profiles

Bgee: expression breadth broad, 93 present calls, max score 98.21.

Top tissues by expression

93 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	98.21	gold quality
right testis	UBERON:0004534	80.78	gold quality
left testis	UBERON:0004533	80.29	gold quality
testis	UBERON:0000473	79.12	gold quality
skeletal muscle tissue	UBERON:0001134	67.60	gold quality
urinary bladder	UBERON:0001255	66.98	silver quality
lymph node	UBERON:0000029	66.76	gold quality
placenta	UBERON:0001987	63.33	gold quality
islet of Langerhans	UBERON:0000006	62.77	gold quality
blood	UBERON:0000178	62.75	gold quality
monocyte	CL:0000576	61.82	gold quality
calcaneal tendon	UBERON:0003701	60.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.78	gold quality
muscle of leg	UBERON:0001383	59.20	gold quality
heart left ventricle	UBERON:0002084	59.20	gold quality
gastrocnemius	UBERON:0001388	58.51	gold quality
left coronary artery	UBERON:0001626	56.28	gold quality
body of pancreas	UBERON:0001150	55.47	gold quality
multicellular organism	UBERON:0000468	55.35	gold quality
right adrenal gland cortex	UBERON:0035827	55.25	gold quality
left ovary	UBERON:0002119	55.24	gold quality
apex of heart	UBERON:0002098	55.21	gold quality
heart	UBERON:0000948	55.01	gold quality
ovary	UBERON:0000992	54.98	gold quality
omental fat pad	UBERON:0010414	54.82	gold quality
prefrontal cortex	UBERON:0000451	54.70	gold quality
liver	UBERON:0002107	54.66	gold quality
left adrenal gland	UBERON:0001234	54.59	gold quality
adrenal gland	UBERON:0002369	54.49	gold quality
left adrenal gland cortex	UBERON:0035825	54.15	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.42

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.