LINC03057

Summary

LINC03057 (long intergenic non-protein coding RNA 3057, HGNC:56359) is a long non-coding RNA gene on chromosome 17q21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56359
Approved symbol	LINC03057
Name	long intergenic non-protein coding RNA 3057
Location	17q21.32
Locus type	RNA, long non-coding
Status	Approved
Aliases	lnc-HOXB8-1:2, RP11-357H14.17
Ensembl gene	ENSG00000272763
Ensembl biotype	lncRNA
Entrez	127379715
RNAcentral	URS00026A25CA — lncRNA, 2218 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000425510, ENST00000433510, ENST00000608940, ENST00000765528, ENST00000765529

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425510 — 3 exons

Exon	Start	End
ENSE00004123448	48635243	48636773
ENSE00004123453	48639086	48639398
ENSE00004123455	48636868	48636993

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 90.41.

Top tissues by expression

204 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
mucosa of transverse colon	UBERON:0004991	90.41	gold quality
rectum	UBERON:0001052	88.86	gold quality
ileal mucosa	UBERON:0000331	85.92	gold quality
transverse colon	UBERON:0001157	84.61	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.43	gold quality
mucosa of sigmoid colon	UBERON:0004993	80.88	gold quality
colonic mucosa	UBERON:0000317	80.62	gold quality
tibialis anterior	UBERON:0001385	77.43	silver quality
small intestine Peyer’s patch	UBERON:0003454	75.41	gold quality
colonic epithelium	UBERON:0000397	75.00	gold quality
large intestine	UBERON:0000059	74.24	gold quality
colon	UBERON:0001155	73.95	gold quality
pancreatic ductal cell	CL:0002079	73.62	silver quality
intestine	UBERON:0000160	73.50	gold quality
buccal mucosa cell	CL:0002336	73.17	gold quality
cerebellar vermis	UBERON:0004720	71.78	gold quality
small intestine	UBERON:0002108	71.50	gold quality
kidney epithelium	UBERON:0004819	68.45	gold quality
nasal cavity epithelium	UBERON:0005384	68.15	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	67.59	gold quality
caecum	UBERON:0001153	66.82	gold quality
seminal vesicle	UBERON:0000998	66.70	gold quality
parotid gland	UBERON:0001831	65.77	gold quality
vermiform appendix	UBERON:0001154	65.76	gold quality
metanephros cortex	UBERON:0010533	65.46	gold quality
bone marrow cell	CL:0002092	64.47	silver quality
sperm	CL:0000019	64.42	gold quality
sural nerve	UBERON:0015488	64.12	gold quality
adult mammalian kidney	UBERON:0000082	63.57	gold quality
deltoid	UBERON:0001476	63.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	7.34

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.