LINC03060

Summary

LINC03060 (long intergenic non-protein coding RNA 3060, HGNC:56367) is a long non-coding RNA gene on chromosome 7q33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56367
Approved symbol	LINC03060
Name	long intergenic non-protein coding RNA 3060
Location	7q33
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-38M8.1
Ensembl gene	ENSG00000273297
Ensembl biotype	lncRNA
Entrez	105375519
RNAcentral	URS00026A1C87 — lncRNA, 1796 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 57 — 57 lncRNA

ENST00000607945, ENST00000609209, ENST00000609619, ENST00000656398, ENST00000656533, ENST00000657533, ENST00000659058, ENST00000660417, ENST00000660944, ENST00000661597, ENST00000663723, ENST00000664174, ENST00000665177, ENST00000665229, ENST00000666435, ENST00000668753, ENST00000669463, ENST00000669960, ENST00000685196, ENST00000687475, ENST00000701206, ENST00000843261, ENST00000843262, ENST00000843263, ENST00000843264, ENST00000843265, ENST00000843266, ENST00000843267, ENST00000843268, ENST00000843269, ENST00000843270, ENST00000843271, ENST00000843272, ENST00000843273, ENST00000843274, ENST00000843275, ENST00000843276, ENST00000843277, ENST00000843278, ENST00000843279, ENST00000843280, ENST00000843281, ENST00000843282, ENST00000843283, ENST00000843284, ENST00000843285, ENST00000843286, ENST00000843287, ENST00000843288, ENST00000843289, ENST00000843290, ENST00000843291, ENST00000843292, ENST00000843293, ENST00000843294, ENST00000843295, ENST00000843296

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000607945 — 3 exons

Exon	Start	End
ENSE00003707990	134417972	134418126
ENSE00004269170	134432314	134432431
ENSE00004269185	134415579	134416412

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 79.90.

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.90	gold quality
colonic epithelium	UBERON:0000397	74.96	gold quality
bone marrow cell	CL:0002092	69.04	silver quality
islet of Langerhans	UBERON:0000006	68.22	gold quality
monocyte	CL:0000576	64.34	gold quality
placenta	UBERON:0001987	64.33	gold quality
duodenum	UBERON:0002114	64.29	gold quality
right adrenal gland cortex	UBERON:0035827	64.18	gold quality
putamen	UBERON:0001874	63.77	gold quality
ventricular zone	UBERON:0003053	63.72	gold quality
leukocyte	CL:0000738	63.71	gold quality
right adrenal gland	UBERON:0001233	63.61	gold quality
hypothalamus	UBERON:0001898	63.54	gold quality
nucleus accumbens	UBERON:0001882	63.18	gold quality
caudate nucleus	UBERON:0001873	62.65	gold quality
metanephros cortex	UBERON:0010533	62.33	gold quality
pituitary gland	UBERON:0000007	61.86	gold quality
calcaneal tendon	UBERON:0003701	61.82	gold quality
cortical plate	UBERON:0005343	61.64	gold quality
substantia nigra	UBERON:0002038	61.40	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	61.17	gold quality
body of stomach	UBERON:0001161	60.49	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	60.16	gold quality
left adrenal gland	UBERON:0001234	59.93	gold quality
adenohypophysis	UBERON:0002196	59.72	gold quality
adrenal gland	UBERON:0002369	59.61	gold quality
stomach	UBERON:0000945	59.51	gold quality
muscle tissue	UBERON:0002385	59.19	gold quality
prefrontal cortex	UBERON:0000451	59.15	gold quality
cortex of kidney	UBERON:0001225	59.05	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.