LINC03074

Summary

LINC03074 (long intergenic non-protein coding RNA 3074, HGNC:56654) is a long non-coding RNA gene on chromosome 4q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56654
Approved symbol	LINC03074
Name	long intergenic non-protein coding RNA 3074
Location	4q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251249
Ensembl biotype	lncRNA
Entrez	100505685
RNAcentral	URS00026A22F5 — lncRNA, 2661 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 60 — 59 lncRNA, 1 retained_intron

ENST00000504207, ENST00000507949, ENST00000513617, ENST00000513759, ENST00000515329, ENST00000653329, ENST00000653501, ENST00000657686, ENST00000659253, ENST00000663327, ENST00000664690, ENST00000669340, ENST00000670924, ENST00000685877, ENST00000690012, ENST00000731483, ENST00000731484, ENST00000731485, ENST00000731486, ENST00000731487, ENST00000731488, ENST00000731489, ENST00000731490, ENST00000731491, ENST00000731492, ENST00000731493, ENST00000731494, ENST00000731495, ENST00000731496, ENST00000731588, ENST00000731589, ENST00000731590, ENST00000731591, ENST00000731592, ENST00000731593, ENST00000731594, ENST00000731595, ENST00000731596, ENST00000731597, ENST00000731598, ENST00000731599, ENST00000731600, ENST00000731601, ENST00000731602, ENST00000731603, ENST00000731604, ENST00000731605, ENST00000731606, ENST00000731607, ENST00000731608, ENST00000731609, ENST00000731610, ENST00000731611, ENST00000731612, ENST00000731613, ENST00000731614, ENST00000731615, ENST00000731616, ENST00000732459, ENST00000732460

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504207 — 2 exons

Exon	Start	End
ENSE00004062852	151957154	151957582
ENSE00004062856	151955977	151956256

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 97.70.

Top tissues by expression

191 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	97.70	gold quality
left testis	UBERON:0004533	86.52	gold quality
right testis	UBERON:0004534	85.45	gold quality
testis	UBERON:0000473	83.19	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.13	silver quality
adult organism	UBERON:0007023	67.96	gold quality
ganglionic eminence	UBERON:0004023	57.82	silver quality
leukocyte	CL:0000738	57.36	gold quality
monocyte	CL:0000576	56.99	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
epithelial cell of pancreas	CL:0000083	53.54	gold quality
muscle of leg	UBERON:0001383	53.52	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
prefrontal cortex	UBERON:0000451	52.59	gold quality
sural nerve	UBERON:0015488	51.63	silver quality
pancreatic ductal cell	CL:0002079	50.86	silver quality
vermiform appendix	UBERON:0001154	50.41	gold quality
left ovary	UBERON:0002119	50.36	gold quality
myocardium	UBERON:0002349	50.25	gold quality
gastrocnemius	UBERON:0001388	50.13	gold quality
cauda epididymis	UBERON:0004360	49.68	gold quality
left lobe of thyroid gland	UBERON:0001120	49.62	gold quality
ileal mucosa	UBERON:0000331	49.50	silver quality
islet of Langerhans	UBERON:0000006	48.68	silver quality
cerebellar vermis	UBERON:0004720	48.63	gold quality
cardiac atrium	UBERON:0002081	48.44	silver quality
calcaneal tendon	UBERON:0003701	48.40	silver quality
lymph node	UBERON:0000029	48.36	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.