LINC03077

Summary

LINC03077 (long intergenic non-protein coding RNA 3077, HGNC:56657) is a long non-coding RNA gene on chromosome Xq21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56657
Approved symbol	LINC03077
Name	long intergenic non-protein coding RNA 3077
Location	Xq21.33
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-485F13.1
Ensembl gene	ENSG00000281566
Ensembl biotype	lncRNA
Entrez	128071542
RNAcentral	URS00026A2169 — lncRNA, 3350 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000626665, ENST00000627700, ENST00000649508, ENST00000650384, ENST00000702280, ENST00000788119, ENST00000788120, ENST00000788121, ENST00000788122, ENST00000788123, ENST00000788124, ENST00000788125, ENST00000788126, ENST00000788127, ENST00000788128, ENST00000788129, ENST00000788130, ENST00000788131, ENST00000788132, ENST00000788134, ENST00000788135, ENST00000788136, ENST00000788137, ENST00000788138, ENST00000788139, ENST00000788140, ENST00000788141

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000626665 — 6 exons

Exon	Start	End
ENSE00003761677	98573859	98573932
ENSE00003765925	98785027	98785124
ENSE00003768550	98644528	98644574
ENSE00003771241	98731531	98731577
ENSE00003772635	98864611	98865564
ENSE00003774756	98578986	98579074

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 80.48.

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.48	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.96	gold quality
monocyte	CL:0000576	61.67	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.68	gold quality
lymph node	UBERON:0000029	54.46	gold quality
muscle tissue	UBERON:0002385	53.12	gold quality
blood	UBERON:0000178	52.52	silver quality
islet of Langerhans	UBERON:0000006	52.36	gold quality
urinary bladder	UBERON:0001255	52.34	gold quality
myometrium	UBERON:0001296	52.34	gold quality
bone marrow	UBERON:0002371	51.75	silver quality
muscle of leg	UBERON:0001383	51.44	gold quality
apex of heart	UBERON:0002098	51.19	gold quality
gastrocnemius	UBERON:0001388	50.57	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.37	gold quality
calcaneal tendon	UBERON:0003701	50.27	silver quality
liver	UBERON:0002107	50.08	silver quality
mucosa of stomach	UBERON:0001199	49.92	gold quality
smooth muscle tissue	UBERON:0001135	49.60	gold quality
prefrontal cortex	UBERON:0000451	49.38	gold quality
body of uterus	UBERON:0009853	49.16	gold quality
heart left ventricle	UBERON:0002084	49.06	gold quality
placenta	UBERON:0001987	48.99	gold quality
muscle layer of sigmoid colon	UBERON:0035805	48.72	gold quality
pancreas	UBERON:0001264	48.59	gold quality
vermiform appendix	UBERON:0001154	48.41	gold quality
right lobe of liver	UBERON:0001114	48.02	silver quality
cortex of kidney	UBERON:0001225	47.99	silver quality
putamen	UBERON:0001874	47.79	gold quality
kidney	UBERON:0002113	47.67	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.41

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.