LINC03078

Summary

LINC03078 (long intergenic non-protein coding RNA 3078, HGNC:56665) is a long non-coding RNA gene on chromosome 19q13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56665
Approved symbol	LINC03078
Name	long intergenic non-protein coding RNA 3078
Location	19q13.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC005392.2, CTC-490G23.2
Ensembl gene	ENSG00000231412
Ensembl biotype	lncRNA
Entrez	128193286
RNAcentral	URS00026A238C — lncRNA, 685 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000595748, ENST00000835420, ENST00000835421

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000595748 — 2 exons

Exon	Start	End
ENSE00004253886	43331344	43331550
ENSE00004253890	43328987	43329508

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 92.05.

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
blood	UBERON:0000178	92.05	gold quality
tonsil	UBERON:0002372	87.78	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.48	gold quality
monocyte	CL:0000576	82.75	gold quality
ectocervix	UBERON:0012249	82.65	gold quality
esophagus mucosa	UBERON:0002469	81.93	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	81.89	gold quality
bone marrow cell	CL:0002092	80.70	gold quality
bone marrow	UBERON:0002371	79.54	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.49	gold quality
left uterine tube	UBERON:0001303	76.73	gold quality
ganglionic eminence	UBERON:0004023	74.48	gold quality
esophagus	UBERON:0001043	73.44	gold quality
spleen	UBERON:0002106	72.59	gold quality
lower esophagus mucosa	UBERON:0035834	72.07	gold quality
mucosa of transverse colon	UBERON:0004991	71.88	gold quality
endometrium	UBERON:0001295	70.90	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.61	gold quality
rectum	UBERON:0001052	68.39	gold quality
transverse colon	UBERON:0001157	67.86	gold quality
cortex of kidney	UBERON:0001225	67.15	gold quality
vagina	UBERON:0000996	66.89	gold quality
vermiform appendix	UBERON:0001154	65.97	gold quality
upper lobe of left lung	UBERON:0008952	65.83	gold quality
fallopian tube	UBERON:0003889	65.66	gold quality
smooth muscle tissue	UBERON:0001135	65.00	gold quality
primary visual cortex	UBERON:0002436	64.68	gold quality
urinary bladder	UBERON:0001255	64.64	gold quality
lung	UBERON:0002048	64.39	gold quality
lymph node	UBERON:0000029	64.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.51

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• N4-acetylcytidine modification of lncRNA CTC-490G23.2 promotes cancer metastasis through interacting with PTBP1 to increase CD44 alternative splicing. (PMID:36792757)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.